HHsearch alignment for GI: 254780163 and conserved domain: COG2256
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair].
Probab=99.54 E-value=1.5e-13 Score=116.48 Aligned_cols=238 Identities=24% Similarity=0.371 Sum_probs=152.4
Q ss_pred HHHHHHCCCCHHHH------HHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEE
Q ss_conf 58877548611222------178999999998622677874896676411668999999998548988345201445540
Q gi|254780163|r 194 LTEKVKKGKVDILV------GRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLD 267 (798)
Q Consensus 194 LTe~AreGKLDPVI------GRd~EI~riiqIL~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld 267 (798)
T Consensus 14 LA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~---~~l~SmIl~GPPG~GKTTlA~liA~~~----------~~~f~~~s 80 (436)
T COG2256 14 LAERLRPKSLDEVVGQEHLLGEGKPLRRAVEA---GHLHSMILWGPPGTGKTTLARLIAGTT----------NAAFEALS 80 (436)
T ss_pred HHHHHCCCCHHHHCCHHHHHCCCCHHHHHHHC---CCCCEEEEECCCCCCHHHHHHHHHHHH----------CCCEEEEC
T ss_conf 67770977787855718661899438999964---998605777899988889999998761----------77669951
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHCCC-C---CEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCHH
Q ss_conf 4675306343123789999999872038-9---83999736166301554443447778888766302660388730489
Q gi|254780163|r 268 MGNLIAGTRYRGDFEERIKKIVKEIESY-A---NAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGSTTYS 343 (798)
Q Consensus 268 ~~~l~ag~~~rg~fe~r~~~~~~~~~~~-~---~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~~IgatT~~ 343 (798)
T Consensus 81 --Av~~gv-------kdlr~i~e~a~~~~~~gr~tiLflDEIHRfn---K~Q---QD---~lLp~vE~G~iilIGATTEN 142 (436)
T COG2256 81 --AVTSGV-------KDLREIIEEARKNRLLGRRTILFLDEIHRFN---KAQ---QD---ALLPHVENGTIILIGATTEN 142 (436)
T ss_pred --CCCCCH-------HHHHHHHHHHHHHHHCCCCEEEEEEHHHHCC---HHH---HH---HHHHHHCCCEEEEEECCCCC
T ss_conf --523467-------9999999999998725883499872253337---445---65---51033248868999626789
Q ss_pred HHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHH-HHHHHHHHC--CCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 99998520111432001443068786899999986-127665410--351211178999998654201555646798899
Q gi|254780163|r 344 EYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKG-IKPYFEEHH--QLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVI 420 (798)
Q Consensus 344 ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~-~~~~ye~~h--~v~~~~~al~~av~ls~ryi~~r~lPdkAidll 420 (798)
T Consensus 143 Ps---F~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD------~R~aLN~L 213 (436)
T COG2256 143 PS---FELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGD------ARRALNLL 213 (436)
T ss_pred CC---EEECHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCH------HHHHHHHH
T ss_conf 87---1403888611041565169989999999999865413777655668889999999862861------99998899
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHCCHHHHHHHCHH
Q ss_conf 865333321144322113657899986631024531011100112334210000246653458
Q gi|254780163|r 421 DEAGASQILQPLSKRRKFITEKDIKKTIASMNRSIHTTSFSRDDDSVLSNLEKNLGTVVYGQE 483 (798)
Q Consensus 421 Dea~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~gip~~~~~~~~~~~l~~l~~~l~~~v~GQ~ 483 (798)
T Consensus 214 E~~~~~~------~~~~~~~~~~l~~~l~~~~---~--~~Dk~-gD~hYdliSA~hKSvRGSD 264 (436)
T COG2256 214 ELAALSA------EPDEVLILELLEEILQRRS---A--RFDKD-GDAHYDLISALHKSVRGSD 264 (436)
T ss_pred HHHHHHC------CCCCCCCHHHHHHHHHHHH---H--CCCCC-CCHHHHHHHHHHHHHCCCC
T ss_conf 9999862------7775247999999986552---0--56777-6347899999998612688