HHsearch alignment for GI: 254780163 and conserved domain: COG2812
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair].
Probab=98.63 E-value=2.8e-07 Score=71.47 Aligned_cols=212 Identities=23% Similarity=0.330 Sum_probs=125.7
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCC-EEEECCCCCHHHHHHHHHHHHHHCCC--CCHHH----------HE--
Q ss_conf 87754861122217899999999862267787-48966764116689999999985489--88345----------20--
Q gi|254780163|r 196 EKVKKGKVDILVGRHEEINRTIQILCRRSKNN-PLYVGDPGVGKTAIAEGFAKQIVDGM--VPDIL----------LG-- 260 (798)
Q Consensus 196 e~AreGKLDPVIGRd~EI~riiqIL~RR~KNn-~~lvG~~gvGktaive~la~~i~~~~--vp~~l----------~~-- 260 (798)
T Consensus 8 rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~ 87 (515)
T COG2812 8 RKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSL 87 (515)
T ss_pred HHHCCCCHHHHCCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 88583007776364899999999998084233365137777671049999999956889877772253166686514886
Q ss_pred EEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCC----CCCEEEEECCHHHHHCCCCCCCCCCCHHH-HHHHHHC--CCC
Q ss_conf 1445540467530634312378999999987203----89839997361663015544434477788-8876630--266
Q gi|254780163|r 261 ARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIES----YANAILYIDEIHTLVGAGSASGISVDASN-LLKPALS--SGA 333 (798)
Q Consensus 261 ~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~----~~~~ilfideih~ligag~~~g~~~d~an-~lkP~L~--rg~ 333 (798)
T Consensus 88 ~DviEiDaAS------n~gV--ddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS---------~~afNALLK-TLEEPP~h 149 (515)
T COG2812 88 IDVIEIDAAS------NTGV--DDIREIIEKVNYAPSEGRYKVYIIDEVHMLS---------KQAFNALLK-TLEEPPSH 149 (515)
T ss_pred CCCHHHHHHH------CCCH--HHHHHHHHHHCCCCCCCCCEEEEEECHHHHH---------HHHHHHHHC-CCCCCCCC
T ss_conf 4101136444------5486--7999999872468866664189983187643---------788888751-11368667
Q ss_pred EEEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCH
Q ss_conf 03887304899999852011143200144306878689999998612766541035121117899999865420155564
Q gi|254780163|r 334 VRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLP 413 (798)
Q Consensus 334 ~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lP 413 (798)
T Consensus 150 V~FIlATTe~--~Ki--p~T-IlSRcq~f~fkri~~~~I~~~L~~i~----~~E~I~~e~~aL~~ia~~a~Gs~RD---- 216 (515)
T COG2812 150 VKFILATTEP--QKI--PNT-ILSRCQRFDFKRLDLEEIAKHLAAIL----DKEGINIEEDALSLIARAAEGSLRD---- 216 (515)
T ss_pred EEEEEECCCC--CCC--CHH-HHHCCCCCCCCCCCHHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHCCCCHHH----
T ss_conf 4899853886--768--404-55212202225799999999999998----7448754799999999982897456----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 67988998653333211443221136578999866
Q gi|254780163|r 414 DKAIDVIDEAGASQILQPLSKRRKFITEKDIKKTI 448 (798)
Q Consensus 414 dkAidllDea~a~~~~~~~~~~~~~~~~~~i~~~~ 448 (798)
T Consensus 217 --alslLDq~i~~~------~--~~It~~~v~~~l 241 (515)
T COG2812 217 --ALSLLDQAIAFG------E--GEITLESVRDML 241 (515)
T ss_pred --HHHHHHHHHHCC------C--CCCCHHHHHHHH
T ss_conf --777899999706------7--765699999996