HHsearch alignment for GI: 254780163 and conserved domain: COG2812

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair].
Probab=98.63  E-value=2.8e-07  Score=71.47  Aligned_cols=212  Identities=23%  Similarity=0.330  Sum_probs=125.7

Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCC-EEEECCCCCHHHHHHHHHHHHHHCCC--CCHHH----------HE--
Q ss_conf             87754861122217899999999862267787-48966764116689999999985489--88345----------20--
Q gi|254780163|r  196 EKVKKGKVDILVGRHEEINRTIQILCRRSKNN-PLYVGDPGVGKTAIAEGFAKQIVDGM--VPDIL----------LG--  260 (798)
Q Consensus       196 e~AreGKLDPVIGRd~EI~riiqIL~RR~KNn-~~lvG~~gvGktaive~la~~i~~~~--vp~~l----------~~--  260 (798)
T Consensus         8 rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~   87 (515)
T COG2812           8 RKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSL   87 (515)
T ss_pred             HHHCCCCHHHHCCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf             88583007776364899999999998084233365137777671049999999956889877772253166686514886


Q ss_pred             EEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCC----CCCEEEEECCHHHHHCCCCCCCCCCCHHH-HHHHHHC--CCC
Q ss_conf             1445540467530634312378999999987203----89839997361663015544434477788-8876630--266
Q gi|254780163|r  261 ARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIES----YANAILYIDEIHTLVGAGSASGISVDASN-LLKPALS--SGA  333 (798)
Q Consensus       261 ~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~----~~~~ilfideih~ligag~~~g~~~d~an-~lkP~L~--rg~  333 (798)
T Consensus        88 ~DviEiDaAS------n~gV--ddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS---------~~afNALLK-TLEEPP~h  149 (515)
T COG2812          88 IDVIEIDAAS------NTGV--DDIREIIEKVNYAPSEGRYKVYIIDEVHMLS---------KQAFNALLK-TLEEPPSH  149 (515)
T ss_pred             CCCHHHHHHH------CCCH--HHHHHHHHHHCCCCCCCCCEEEEEECHHHHH---------HHHHHHHHC-CCCCCCCC
T ss_conf             4101136444------5486--7999999872468866664189983187643---------788888751-11368667


Q ss_pred             EEEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCH
Q ss_conf             03887304899999852011143200144306878689999998612766541035121117899999865420155564
Q gi|254780163|r  334 VRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLP  413 (798)
Q Consensus       334 ~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lP  413 (798)
T Consensus       150 V~FIlATTe~--~Ki--p~T-IlSRcq~f~fkri~~~~I~~~L~~i~----~~E~I~~e~~aL~~ia~~a~Gs~RD----  216 (515)
T COG2812         150 VKFILATTEP--QKI--PNT-ILSRCQRFDFKRLDLEEIAKHLAAIL----DKEGINIEEDALSLIARAAEGSLRD----  216 (515)
T ss_pred             EEEEEECCCC--CCC--CHH-HHHCCCCCCCCCCCHHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHCCCCHHH----
T ss_conf             4899853886--768--404-55212202225799999999999998----7448754799999999982897456----


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             67988998653333211443221136578999866
Q gi|254780163|r  414 DKAIDVIDEAGASQILQPLSKRRKFITEKDIKKTI  448 (798)
Q Consensus       414 dkAidllDea~a~~~~~~~~~~~~~~~~~~i~~~~  448 (798)
T Consensus       217 --alslLDq~i~~~------~--~~It~~~v~~~l  241 (515)
T COG2812         217 --ALSLLDQAIAFG------E--GEITLESVRDML  241 (515)
T ss_pred             --HHHHHHHHHHCC------C--CCCCHHHHHHHH
T ss_conf             --777899999706------7--765699999996