HHsearch alignment for GI: 254780163 and conserved domain: COG3604
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms].
Probab=99.04 E-value=2.4e-08 Score=79.13 Aligned_cols=214 Identities=21% Similarity=0.319 Sum_probs=162.5
Q ss_pred HHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC---CCCEEEEEHHHHHCCCCCCHHCC
Q ss_conf 653458999999999877520445657874068861432003889999987304---77337720688612465301104
Q gi|254780163|r 478 VVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL---GVQLLRFDMSEYMERHAVSRLIG 554 (798)
Q Consensus 478 ~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~---~~~lir~dmsey~e~~~vs~LiG 554 (798)
T Consensus 224 ~iIG~S~am~~ll~~i~~V----A~Sd~---tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFG 296 (550)
T COG3604 224 GIIGRSPAMRQLLKEIEVV----AKSDS---TVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFG 296 (550)
T ss_pred CCCCCCHHHHHHHHHHHHH----HCCCC---EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHC
T ss_conf 6230699999999999987----26898---0798458885389999999873755579866631222537888888745
Q ss_pred CCCHHCCCCCCCCCCHHHHHCCC-------EEEEECCHHHCCHHHHHHHHHHHHHHHCC---CCCCCEECCCCEEEEEEC
Q ss_conf 78000256444310035551585-------17774044550289999999987775021---779977612542999942
Q gi|254780163|r 555 APPGYVGFGQGGILADSVDQNPY-------SVVLLDEIEKSHPDVLNILLQIMDYGILT---DQSGKKISFRNVILIMTT 624 (798)
Q Consensus 555 appGYvG~~egg~Lte~vr~~P~-------sVvl~DEiEKAh~~v~~~llqild~G~lt---d~~Gr~vdf~n~iii~Ts 624 (798)
T Consensus 297 -------HeK-GAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVD---VRiIAAT 365 (550)
T COG3604 297 -------HEK-GAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVD---VRVIAAT 365 (550)
T ss_pred -------CCC-CCCCCCHHCCCCCEEECCCCEEECHHHCCCCHHHHHHHHHHHHHCCEEECCCCCEEEEE---EEEEECC
T ss_conf -------332-23335101467635655797576022036787788999999863652534799636777---8998213
Q ss_pred CCCHHHHHHCCCCCCCCCCHHHHHHHH-HHHCCHHHHCCCCEEEEC-CCC--CHHHHHHHHHHHHHHHHHHHHHCCC-EE
Q ss_conf 421455330368988211148899999-872887881776828962-889--9999999999999999999986698-89
Q gi|254780163|r 625 NAGALEMSKARIGFGSSRNDDADKEAL-RNFLSPEFLNRLDSIIPF-FPL--SSDIIRQVVHKFIMKLELQLQEKGI-SF 699 (798)
Q Consensus 625 N~G~~~~~~~~~g~~~~~~~~~~~~~l-~~~f~peflnRid~ii~F-~~l--~~~~~~~i~~~~l~~l~~~l~~~~i-~l 699 (798)
T Consensus 366 NR-------------------DL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~---gr~~l 423 (550)
T COG3604 366 NR-------------------DLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRL---GRAIL 423 (550)
T ss_pred CH-------------------HHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC---CCCCC
T ss_conf 53-------------------099998749515545321020013789834588667999999999998863---97640
Q ss_pred EECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9988999999971898101532679999986235
Q gi|254780163|r 700 HFSEEVINWLVSHGYDVKMGARPLERIIKEHVKV 733 (798)
Q Consensus 700 ~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~ 733 (798)
T Consensus 424 ~ls~~Al~~L~~y~wPG--NVRELen~veRavll 455 (550)
T COG3604 424 SLSAEALELLSSYEWPG--NVRELENVVERAVLL 455 (550)
T ss_pred CCCHHHHHHHHCCCCCC--CHHHHHHHHHHHHHH
T ss_conf 33989999997399997--199999899999997