HHsearch alignment for GI: 254780163 and conserved domain: KOG0740
>KOG0740 consensus.
Probab=98.11 E-value=0.00011 Score=52.69 Aligned_cols=128 Identities=27% Similarity=0.357 Sum_probs=72.7
Q ss_pred HHCHHHHHHHHHHHHHHHHC---CCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHCCC
Q ss_conf 53458999999999877520---445657874068861432003889999987304773377206886124653011047
Q gi|254780163|r 479 VYGQEEAIKKLSSSIKIARA---GLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGA 555 (798)
Q Consensus 479 v~GQ~~ai~~v~~~i~~~~~---gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~LiGa 555 (798)
T Consensus 155 i~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSas---------sLtsK 225 (428)
T KOG0740 155 IAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISAS---------SLTSK 225 (428)
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHEECCCCCCHHHHHHHHHHHHCCEEEECCHH---------HHHHH
T ss_conf 740566899865423220455376523544531112005898844799999986206657630688---------86532
Q ss_pred CCHHCCCCC-CCCCCHHH-HHCCCEEEEECCHHH--------CCHH----HHHHHHHHHHHHHCCCCCCCEECCCCEEEE
Q ss_conf 800025644-43100355-515851777404455--------0289----999999987775021779977612542999
Q gi|254780163|r 556 PPGYVGFGQ-GGILADSV-DQNPYSVVLLDEIEK--------SHPD----VLNILLQIMDYGILTDQSGKKISFRNVILI 621 (798)
Q Consensus 556 ppGYvG~~e-gg~Lte~v-r~~P~sVvl~DEiEK--------Ah~~----v~~~llqild~G~ltd~~Gr~vdf~n~iii 621 (798)
T Consensus 226 ---~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~--~~~s~~~d------rvlvi 294 (428)
T KOG0740 226 ---YVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFD--GKNSAPDD------RVLVI 294 (428)
T ss_pred ---CCCHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCCCCCCCHHHHHHHHHHHC--CCCCCCCC------EEEEE
T ss_conf ---46707789999999987139708984025678863687545445556557776540--44578887------07998
Q ss_pred EECCC
Q ss_conf 94242
Q gi|254780163|r 622 MTTNA 626 (798)
Q Consensus 622 ~TsN~ 626 (798)
T Consensus 295 gaTN~ 299 (428)
T KOG0740 295 GATNR 299 (428)
T ss_pred ECCCC
T ss_conf 15888