HHsearch alignment for GI: 254780163 and conserved domain: PRK00080
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed.
Probab=99.25 E-value=1.1e-09 Score=88.84 Aligned_cols=200 Identities=21% Similarity=0.287 Sum_probs=132.3
Q ss_pred HHCCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCC
Q ss_conf 10000246653458999999999877520445657874068861432003889999987304773377206886124653
Q gi|254780163|r 470 NLEKNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAV 549 (798)
Q Consensus 470 ~l~~~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~v 549 (798)
T Consensus 18 ~lRP~~l~efiGQ~~i~~~L~v~i~Aak----~r~e~ldH~Ll~GPPGlGKTTLA~iiA~E~~~~~~~tsGP~lek~~-- 91 (328)
T PRK00080 18 SLRPKSLDEFIGQEKVKENLKIFIEAAK----KRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKAG-- 91 (328)
T ss_pred CCCCCCHHHCCCHHHHHHHHHHHHHHHH----HCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEECCCCCCCCHH--
T ss_conf 5598857663595999999999999999----6499988057658899889999999999868881562450016747--
Q ss_pred CHHCCCCCHHCCCCCCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCC--CCC---CEE--CCCC-EEEE
Q ss_conf 0110478000256444310035551585177740445502899999999877750217--799---776--1254-2999
Q gi|254780163|r 550 SRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTD--QSG---KKI--SFRN-VILI 621 (798)
Q Consensus 550 s~LiGappGYvG~~egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd--~~G---r~v--df~n-~iii 621 (798)
T Consensus 92 -------------DL~~iLt~---l~~~dvLFIDEIHRl~~~vEE~LY~AMEDf~iDi~iG~g~~Ar~~~i~L~pFTLIG 155 (328)
T PRK00080 92 -------------DLAALLTN---LEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIG 155 (328)
T ss_pred -------------HHHHHHHH---CCCCCEEEEHHHHHCCHHHHHHHHHHHHHCEEEEEECCCCCCEEEECCCCCEEEEE
T ss_conf -------------89999960---88787676506532488899885798775234578647865324555899834740
Q ss_pred EECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 94242145533036898821114889999987288788177682896288999999999999999999999866988999
Q gi|254780163|r 622 MTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHF 701 (798)
Q Consensus 622 ~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~ 701 (798)
T Consensus 156 ATTr~g--------------------------~Ls~PLrdRFGi~~~l~~Y~~eeL~~Ii~rsa~~---------l~i~i 200 (328)
T PRK00080 156 ATTRAG--------------------------LLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARI---------LGIEI 200 (328)
T ss_pred CCCCCC--------------------------CCCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHH---------HCCCC
T ss_conf 136766--------------------------5776789757933663458999999999999998---------39887
Q ss_pred CHHHHHHHHHCCC-CCCCCCHHHHHH
Q ss_conf 8899999997189-810153267999
Q gi|254780163|r 702 SEEVINWLVSHGY-DVKMGARPLERI 726 (798)
Q Consensus 702 ~~~~~~~l~~~~~-~~~~GAR~l~r~ 726 (798)
T Consensus 201 ~~~~~~eIA~rSRGTPRiAnrLLrRv 226 (328)
T PRK00080 201 DEEGALEIARRSRGTPRIANRLLRRV 226 (328)
T ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 89999999986389839999999999