HHsearch alignment for GI: 254780163 and conserved domain: PRK00440
>PRK00440 rfc replication factor C small subunit; Reviewed.
Probab=99.31 E-value=6.4e-10 Score=90.43 Aligned_cols=194 Identities=24% Similarity=0.360 Sum_probs=136.6
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCC
Q ss_conf 88775486112221789999999986226778748966764116689999999985489883452014455404675306
Q gi|254780163|r 195 TEKVKKGKVDILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAG 274 (798)
Q Consensus 195 Te~AreGKLDPVIGRd~EI~riiqIL~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag 274 (798)
T Consensus 7 ~eKYRP~~l~di~g~~~~~~~L~~~i~~~~~phlLf~GppG~GKTt~a~~la~~l~~~~~~-----~~~lelnasd---- 77 (318)
T PRK00440 7 VEKYRPRSLDEVVGQEEIVERLKSFVKEKNMPHLLFAGPPGTGKTTAALALARELYGEYWR-----ENFLELNASD---- 77 (318)
T ss_pred HHCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC-----CCEEEECCCC----
T ss_conf 4601989899941969999999999987998669888959988999999999997698643-----4768951645----
Q ss_pred CCCCC--HHHHHHHHHHHHHC--CCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCC--CCEEEEEECCHHHHHHH
Q ss_conf 34312--37899999998720--38983999736166301554443447778888766302--66038873048999998
Q gi|254780163|r 275 TRYRG--DFEERIKKIVKEIE--SYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSS--GAVRCIGSTTYSEYRQF 348 (798)
Q Consensus 275 ~~~rg--~fe~r~~~~~~~~~--~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~r--g~~~~IgatT~~ey~~~ 348 (798)
T Consensus 78 --~r~id~vr~~i~~~~~~~~~~~~~~kiiiiDE~d~l---------~~~aq~aL~~~mE~~~~~~~fil~~n~--~~ki 144 (318)
T PRK00440 78 --ERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNL---------TSDAQQALRRTMEMYSQTTRFILSCNY--SSKI 144 (318)
T ss_pred --CCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCC---------CHHHHHHHHHHHHCCCCCCEEEEECCC--CCCC
T ss_conf --667178999999999726778997389998685532---------255678887643105666258863488--3337
Q ss_pred HHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 520111432001443068786899999986127665410351211178999998654201555646798899865
Q gi|254780163|r 349 FEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVIDEA 423 (798)
Q Consensus 349 ~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdkAidllDea 423 (798)
T Consensus 145 i---~~i~SRc~~i~f~~~~~~~i~~~L~~I~~----~E~i~~~~~~l~~i~~~s~gd------lR~ain~Lq~~ 206 (318)
T PRK00440 145 I---DPIQSRCAVFRFSPLPKEAVIERLRYIAK----NEGLEITDDALEAIYYVSEGD------MRKAINALQAA 206 (318)
T ss_pred C---CCHHHHHEEEECCCCCHHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHCCCC------HHHHHHHHHHH
T ss_conf 6---15565510111578999999999999999----859998999999999864998------99999999999