HHsearch alignment for GI: 254780163 and conserved domain: PRK04195
>PRK04195 replication factor C large subunit; Provisional.
Probab=99.17 E-value=1.1e-09 Score=88.81 Aligned_cols=186 Identities=25% Similarity=0.393 Sum_probs=120.9
Q ss_pred HHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHCCCC
Q ss_conf 66534589999999998775204456578740688614320038899999873047733772068861246530110478
Q gi|254780163|r 477 TVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAP 556 (798)
Q Consensus 477 ~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~LiGap 556 (798)
T Consensus 14 ~divg~~~~v~~l~~Wl~~w~~g-~~~~---k~lLL~GPpGvGKTT~a~~lAk~~g~~viElNASD~R~~~~I~~~i~~~ 89 (403)
T PRK04195 14 SDVVGNEKAKKQLREWIESWLKG-KPPK---KALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTKDVIERVAGEA 89 (403)
T ss_pred HHHHCCHHHHHHHHHHHHHHHCC-CCCC---CEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHH
T ss_conf 99858899999999999998739-9657---4699889399879999999999849985997710114789999999987
Q ss_pred CHHCCCCCCCCCCHHHHHCCCEEEEECCHHHCCHH----HHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHH
Q ss_conf 00025644431003555158517774044550289----99999998777502177997761254299994242145533
Q gi|254780163|r 557 PGYVGFGQGGILADSVDQNPYSVVLLDEIEKSHPD----VLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMS 632 (798)
Q Consensus 557 pGYvG~~egg~Lte~vr~~P~sVvl~DEiEKAh~~----v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~ 632 (798)
T Consensus 90 ~------~~~sl~----~~~~KlIIlDEvD~l~~~~d~gg~~al~~~ik~s-------------~~PiIli~Nd----~- 141 (403)
T PRK04195 90 S------TSGSLF----GAKRKLILLDEVDGIHGNADRGGVRAILEIIKKA-------------KNPIILTAND----P- 141 (403)
T ss_pred H------HCCCCC----CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCC-------------CCEEEEEECC----C-
T ss_conf 6------068877----8873499963434457244479999999998548-------------8708998268----4-
Q ss_pred HCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHC
Q ss_conf 03689882111488999998728878817768289628899999999999999999999986698899988999999971
Q gi|254780163|r 633 KARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSH 712 (798)
Q Consensus 633 ~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~ 712 (798)
T Consensus 142 -----~~--~------------~~~~lrs~c-~~i~F~~~~~~~I~~~L~~----I~---~~Egi--~i~~~aL~~Ia~~ 192 (403)
T PRK04195 142 -----YD--P------------SLRPLRNAC-LMIEFKRLSKRSIVPVLKR----IC---RKEGI--ECEEEALREIAER 192 (403)
T ss_pred -----CC--C------------CHHHHHHHH-HHCCCCCCCHHHHHHHHHH----HH---HHCCC--CCCHHHHHHHHHH
T ss_conf -----55--6------------717799766-1221799499999999999----99---97699--9999999999998
Q ss_pred CCCCCCCCHHHHHHHHH
Q ss_conf 89810153267999998
Q gi|254780163|r 713 GYDVKMGARPLERIIKE 729 (798)
Q Consensus 713 ~~~~~~GAR~l~r~i~~ 729 (798)
T Consensus 193 s~G------DlR~aIN~ 203 (403)
T PRK04195 193 SGG------DLRSAIND 203 (403)
T ss_pred CCC------HHHHHHHH
T ss_conf 797------39999999