HHsearch alignment for GI: 254780163 and conserved domain: PRK04195

>PRK04195 replication factor C large subunit; Provisional.
Probab=99.17  E-value=1.1e-09  Score=88.81  Aligned_cols=186  Identities=25%  Similarity=0.393  Sum_probs=120.9

Q ss_pred             HHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHCCCC
Q ss_conf             66534589999999998775204456578740688614320038899999873047733772068861246530110478
Q gi|254780163|r  477 TVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAP  556 (798)
Q Consensus       477 ~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~LiGap  556 (798)
T Consensus        14 ~divg~~~~v~~l~~Wl~~w~~g-~~~~---k~lLL~GPpGvGKTT~a~~lAk~~g~~viElNASD~R~~~~I~~~i~~~   89 (403)
T PRK04195         14 SDVVGNEKAKKQLREWIESWLKG-KPPK---KALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTKDVIERVAGEA   89 (403)
T ss_pred             HHHHCCHHHHHHHHHHHHHHHCC-CCCC---CEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHH
T ss_conf             99858899999999999998739-9657---4699889399879999999999849985997710114789999999987


Q ss_pred             CHHCCCCCCCCCCHHHHHCCCEEEEECCHHHCCHH----HHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHH
Q ss_conf             00025644431003555158517774044550289----99999998777502177997761254299994242145533
Q gi|254780163|r  557 PGYVGFGQGGILADSVDQNPYSVVLLDEIEKSHPD----VLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMS  632 (798)
Q Consensus       557 pGYvG~~egg~Lte~vr~~P~sVvl~DEiEKAh~~----v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~  632 (798)
T Consensus        90 ~------~~~sl~----~~~~KlIIlDEvD~l~~~~d~gg~~al~~~ik~s-------------~~PiIli~Nd----~-  141 (403)
T PRK04195         90 S------TSGSLF----GAKRKLILLDEVDGIHGNADRGGVRAILEIIKKA-------------KNPIILTAND----P-  141 (403)
T ss_pred             H------HCCCCC----CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCC-------------CCEEEEEECC----C-
T ss_conf             6------068877----8873499963434457244479999999998548-------------8708998268----4-


Q ss_pred             HCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHC
Q ss_conf             03689882111488999998728878817768289628899999999999999999999986698899988999999971
Q gi|254780163|r  633 KARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSH  712 (798)
Q Consensus       633 ~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~  712 (798)
T Consensus       142 -----~~--~------------~~~~lrs~c-~~i~F~~~~~~~I~~~L~~----I~---~~Egi--~i~~~aL~~Ia~~  192 (403)
T PRK04195        142 -----YD--P------------SLRPLRNAC-LMIEFKRLSKRSIVPVLKR----IC---RKEGI--ECEEEALREIAER  192 (403)
T ss_pred             -----CC--C------------CHHHHHHHH-HHCCCCCCCHHHHHHHHHH----HH---HHCCC--CCCHHHHHHHHHH
T ss_conf             -----55--6------------717799766-1221799499999999999----99---97699--9999999999998


Q ss_pred             CCCCCCCCHHHHHHHHH
Q ss_conf             89810153267999998
Q gi|254780163|r  713 GYDVKMGARPLERIIKE  729 (798)
Q Consensus       713 ~~~~~~GAR~l~r~i~~  729 (798)
T Consensus       193 s~G------DlR~aIN~  203 (403)
T PRK04195        193 SGG------DLRSAIND  203 (403)
T ss_pred             CCC------HHHHHHHH
T ss_conf             797------39999999