HHsearch alignment for GI: 254780163 and conserved domain: PRK05201

>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional.
Probab=99.93  E-value=4.1e-24  Score=192.43  Aligned_cols=240  Identities=23%  Similarity=0.445  Sum_probs=167.3

Q ss_pred             HHCCHHHHHHHCHHHHHHHHHHHHH----HHH--CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHH
Q ss_conf             1000024665345899999999987----752--0445657874068861432003889999987304773377206886
Q gi|254780163|r  470 NLEKNLGTVVYGQEEAIKKLSSSIK----IAR--AGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEY  543 (798)
Q Consensus       470 ~l~~~l~~~v~GQ~~ai~~v~~~i~----~~~--~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey  543 (798)
T Consensus         8 eIv~~LD~yIIGQ~~AKkavAVAlrNr~RR~~l~~~lr~Ei~pk-NILmIGPTGvGKTeIARrLAkl~~aPFvkveATk~   86 (442)
T PRK05201          8 EIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPK-NILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF   86 (442)
T ss_pred             HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf             99998536010827766787778877787531662212334643-16887888866789999999984898587521310


Q ss_pred             HCCCCC----------------------------------------CHHCCCCCHHCCCCCC-----------------C
Q ss_conf             124653----------------------------------------0110478000256444-----------------3
Q gi|254780163|r  544 MERHAV----------------------------------------SRLIGAPPGYVGFGQG-----------------G  566 (798)
Q Consensus       544 ~e~~~v----------------------------------------s~LiGappGYvG~~eg-----------------g  566 (798)
T Consensus        87 TEvGYvGrDVEsiIrdLv~~a~~~~k~~~~~~v~~~A~~~a~~ril~~L~~~~~~~~~~~~~~~~~~~tre~~r~~Lr~G  166 (442)
T PRK05201         87 TEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEEEESSATRQKFRKKLREG  166 (442)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             00343564378899999999999999999999999999999999999855865555555454202367899999998658


Q ss_pred             -----------------------------------------------------------------------CCCHHHHHC
Q ss_conf             -----------------------------------------------------------------------100355515
Q gi|254780163|r  567 -----------------------------------------------------------------------ILADSVDQN  575 (798)
Q Consensus       567 -----------------------------------------------------------------------~Lte~vr~~  575 (798)
T Consensus       167 ~Ldd~~IeIev~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~kkr~~tVkeA~~iL~~eEa~klid~d~v~~eAi~~a  246 (442)
T PRK05201        167 ELDDKEIEIEVADAPGVEIMGPPGMEEMGNQLQDMFGNLGPKKKKKRKLKVKEARKLLIEEEAAKLVDQEEIKQEAIERV  246 (442)
T ss_pred             CCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             86655578861577777777887515566679987640278887404646999999999999986248899999999988


Q ss_pred             -CCEEEEECCHHHCC------------HHHHHHHHHHHHHHHCC-CCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCC
Q ss_conf             -85177740445502------------89999999987775021-77997761254299994242145533036898821
Q gi|254780163|r  576 -PYSVVLLDEIEKSH------------PDVLNILLQIMDYGILT-DQSGKKISFRNVILIMTTNAGALEMSKARIGFGSS  641 (798)
Q Consensus       576 -P~sVvl~DEiEKAh------------~~v~~~llqild~G~lt-d~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~  641 (798)
T Consensus       247 Eq~GIVFIDEIDKIa~~~~~~g~DVS~EGVQrdLLpivE-Gt~V~tK~G-~V~TdhILFIa---sGAFh~sKP-------  314 (442)
T PRK05201        247 EQNGIVFIDEIDKIAKRGEGSGPDVSREGVQRDLLPLVE-GSTVSTKYG-MVKTDHILFIA---SGAFHVAKP-------  314 (442)
T ss_pred             HHCCCEEECHHHHHHCCCCCCCCCCCCHHHHHHHHHHHC-CCCCCCCCC-CCCCCEEEEEC---CCCCCCCCC-------
T ss_conf             761704511465653035788989773307888788753-885556777-60255034550---450014782-------


Q ss_pred             CCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHH----HHHHHHHHHHHCCCEEEECHHHHHHHHHCCCC--
Q ss_conf             114889999987288788177682896288999999999999----99999999986698899988999999971898--
Q gi|254780163|r  642 RNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHK----FIMKLELQLQEKGISFHFSEEVINWLVSHGYD--  715 (798)
Q Consensus       642 ~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~----~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~--  715 (798)
T Consensus       315 --SD---------LIPEl~GRlPv~v~L~~L~~~dl~~ILtepknsL~kQy~~Lf~~egv~L~Ft~~Al~~IA~~A~~~n  383 (442)
T PRK05201        315 --SD---------LIPELQGRFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVN  383 (442)
T ss_pred             --CH---------HHHHHCCCCEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHC
T ss_conf             --02---------2498717550588824499999999967861578999999986249679984799999999999851


Q ss_pred             ---CCCCCHHHHHHHHHHHHH
Q ss_conf             ---101532679999986235
Q gi|254780163|r  716 ---VKMGARPLERIIKEHVKV  733 (798)
Q Consensus       716 ---~~~GAR~l~r~i~~~i~~  733 (798)
T Consensus       384 ~~~~~iGAR~L~tI~E~vl~d  404 (442)
T PRK05201        384 EKTENIGARRLHTVMEKLLED  404 (442)
T ss_pred             CCCCCCCHHHHHHHHHHHHHH
T ss_conf             447667737889999999898