HHsearch alignment for GI: 254780163 and conserved domain: PRK05201
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional.
Probab=99.93 E-value=4.1e-24 Score=192.43 Aligned_cols=240 Identities=23% Similarity=0.445 Sum_probs=167.3
Q ss_pred HHCCHHHHHHHCHHHHHHHHHHHHH----HHH--CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHH
Q ss_conf 1000024665345899999999987----752--0445657874068861432003889999987304773377206886
Q gi|254780163|r 470 NLEKNLGTVVYGQEEAIKKLSSSIK----IAR--AGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEY 543 (798)
Q Consensus 470 ~l~~~l~~~v~GQ~~ai~~v~~~i~----~~~--~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey 543 (798)
T Consensus 8 eIv~~LD~yIIGQ~~AKkavAVAlrNr~RR~~l~~~lr~Ei~pk-NILmIGPTGvGKTeIARrLAkl~~aPFvkveATk~ 86 (442)
T PRK05201 8 EIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPK-NILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 86 (442)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 99998536010827766787778877787531662212334643-16887888866789999999984898587521310
Q ss_pred HCCCCC----------------------------------------CHHCCCCCHHCCCCCC-----------------C
Q ss_conf 124653----------------------------------------0110478000256444-----------------3
Q gi|254780163|r 544 MERHAV----------------------------------------SRLIGAPPGYVGFGQG-----------------G 566 (798)
Q Consensus 544 ~e~~~v----------------------------------------s~LiGappGYvG~~eg-----------------g 566 (798)
T Consensus 87 TEvGYvGrDVEsiIrdLv~~a~~~~k~~~~~~v~~~A~~~a~~ril~~L~~~~~~~~~~~~~~~~~~~tre~~r~~Lr~G 166 (442)
T PRK05201 87 TEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEEEESSATRQKFRKKLREG 166 (442)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 00343564378899999999999999999999999999999999999855865555555454202367899999998658
Q ss_pred -----------------------------------------------------------------------CCCHHHHHC
Q ss_conf -----------------------------------------------------------------------100355515
Q gi|254780163|r 567 -----------------------------------------------------------------------ILADSVDQN 575 (798)
Q Consensus 567 -----------------------------------------------------------------------~Lte~vr~~ 575 (798)
T Consensus 167 ~Ldd~~IeIev~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~kkr~~tVkeA~~iL~~eEa~klid~d~v~~eAi~~a 246 (442)
T PRK05201 167 ELDDKEIEIEVADAPGVEIMGPPGMEEMGNQLQDMFGNLGPKKKKKRKLKVKEARKLLIEEEAAKLVDQEEIKQEAIERV 246 (442)
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 86655578861577777777887515566679987640278887404646999999999999986248899999999988
Q ss_pred -CCEEEEECCHHHCC------------HHHHHHHHHHHHHHHCC-CCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCC
Q ss_conf -85177740445502------------89999999987775021-77997761254299994242145533036898821
Q gi|254780163|r 576 -PYSVVLLDEIEKSH------------PDVLNILLQIMDYGILT-DQSGKKISFRNVILIMTTNAGALEMSKARIGFGSS 641 (798)
Q Consensus 576 -P~sVvl~DEiEKAh------------~~v~~~llqild~G~lt-d~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~ 641 (798)
T Consensus 247 Eq~GIVFIDEIDKIa~~~~~~g~DVS~EGVQrdLLpivE-Gt~V~tK~G-~V~TdhILFIa---sGAFh~sKP------- 314 (442)
T PRK05201 247 EQNGIVFIDEIDKIAKRGEGSGPDVSREGVQRDLLPLVE-GSTVSTKYG-MVKTDHILFIA---SGAFHVAKP------- 314 (442)
T ss_pred HHCCCEEECHHHHHHCCCCCCCCCCCCHHHHHHHHHHHC-CCCCCCCCC-CCCCCEEEEEC---CCCCCCCCC-------
T ss_conf 761704511465653035788989773307888788753-885556777-60255034550---450014782-------
Q ss_pred CCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHH----HHHHHHHHHHHCCCEEEECHHHHHHHHHCCCC--
Q ss_conf 114889999987288788177682896288999999999999----99999999986698899988999999971898--
Q gi|254780163|r 642 RNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHK----FIMKLELQLQEKGISFHFSEEVINWLVSHGYD-- 715 (798)
Q Consensus 642 ~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~----~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~-- 715 (798)
T Consensus 315 --SD---------LIPEl~GRlPv~v~L~~L~~~dl~~ILtepknsL~kQy~~Lf~~egv~L~Ft~~Al~~IA~~A~~~n 383 (442)
T PRK05201 315 --SD---------LIPELQGRFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVN 383 (442)
T ss_pred --CH---------HHHHHCCCCEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHC
T ss_conf --02---------2498717550588824499999999967861578999999986249679984799999999999851
Q ss_pred ---CCCCCHHHHHHHHHHHHH
Q ss_conf ---101532679999986235
Q gi|254780163|r 716 ---VKMGARPLERIIKEHVKV 733 (798)
Q Consensus 716 ---~~~GAR~l~r~i~~~i~~ 733 (798)
T Consensus 384 ~~~~~iGAR~L~tI~E~vl~d 404 (442)
T PRK05201 384 EKTENIGARRLHTVMEKLLED 404 (442)
T ss_pred CCCCCCCHHHHHHHHHHHHHH
T ss_conf 447667737889999999898