HHsearch alignment for GI: 254780163 and conserved domain: PRK05342

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional.
Probab=98.91  E-value=6.4e-08  Score=76.08  Aligned_cols=170  Identities=24%  Similarity=0.401  Sum_probs=105.1

Q ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCH-HHHHHHHHHHHHC----CCCCE
Q ss_conf             778748966764116689999999985489883452014455404675306343123-7899999998720----38983
Q gi|254780163|r  224 SKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGD-FEERIKKIVKEIE----SYANA  298 (798)
Q Consensus       224 ~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~-fe~r~~~~~~~~~----~~~~~  298 (798)
T Consensus       108 ~KsNILliGPTG~GKTlla~tLAk~l---~vPF~iaDAT~l--------TEaGYVGeDVE~ii~~Llq~Ad~dve~Ae~G  176 (411)
T PRK05342        108 QKSNILLIGPTGSGKTLLAQTLARIL---NVPFAIADATTL--------TEAGYVGEDVENILLKLLQAADYDVEKAQRG  176 (411)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEEEECEE--------CCCCCCCCCHHHHHHHHHHHCCCCHHHHHCC
T ss_conf             34538998999977889999999986---999899861200--------1267456079999999999828889988368


Q ss_pred             EEEECCHHHHHCCCCCCCCCCCHH------HHHHHHHCCC-----------------------CEEEEEECCHHH-----
Q ss_conf             999736166301554443447778------8887663026-----------------------603887304899-----
Q gi|254780163|r  299 ILYIDEIHTLVGAGSASGISVDAS------NLLKPALSSG-----------------------AVRCIGSTTYSE-----  344 (798)
Q Consensus       299 ilfideih~ligag~~~g~~~d~a------n~lkP~L~rg-----------------------~~~~IgatT~~e-----  344 (798)
T Consensus       177 IV~IDEIDKIarks~~~s~trDVSgEGVQqaLLk-iiEGt~v~vp~~ggrkhp~~~~~~idT~nILFI~gGAF~GL~~II  255 (411)
T PRK05342        177 IVYIDEIDKIARKSENPSITRDVSGEGVQQALLK-ILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKII  255 (411)
T ss_pred             EEEEEEHHHHHHCCCCCCCCCCCCCHHHHHHHHH-HHCCCEECCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHH
T ss_conf             2888502345424788888777651248999999-875871411888777787765167614717999115533589999


Q ss_pred             -------------------------HHHHHHC-C-------HHHHHHCEE-EEECCCCHHHHHHHHH----HHHHHHHHH
Q ss_conf             -------------------------9998520-1-------114320014-4306878689999998----612766541
Q gi|254780163|r  345 -------------------------YRQFFEK-D-------KALVRRFQK-IDVSEPSIEDAIEIVK----GIKPYFEEH  386 (798)
Q Consensus       345 -------------------------y~~~~e~-d-------~al~rrF~~-i~v~ep~~~~~~~iL~----~~~~~ye~~  386 (798)
T Consensus       256 ~~R~~~~~iGF~~~~~~~~~~~~~~~l~~v~p~DLi~fGlIPEfiGRlPViv~L~~L~~~~L~~ILtePkNaLikQY~~L  335 (411)
T PRK05342        256 KQRLGKSGIGFGAEVKSKDEKDLGELLAQVEPEDLVKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKL  335 (411)
T ss_pred             HHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHCCCCHHHHCCCCEEEECCCCCHHHHHHHHCCCCCHHHHHHHHH
T ss_conf             86357887677887664110005678762798788873883776146640546244799999999658741599999999


Q ss_pred             C-----CCEECCHHHHHHHHHHHH
Q ss_conf             0-----351211178999998654
Q gi|254780163|r  387 H-----QLRYSKEAIRAAVQLSVR  405 (798)
Q Consensus       387 h-----~v~~~~~al~~av~ls~r  405 (798)
T Consensus       336 F~~dgV~L~Ft~~AL~~IA~~A~~  359 (411)
T PRK05342        336 FEMDGVELEFTDDALEAIAKKAIE  359 (411)
T ss_pred             HHHCCCEEEECHHHHHHHHHHHHH
T ss_conf             975496799868999999999998