HHsearch alignment for GI: 254780163 and conserved domain: PRK05342
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional.
Probab=98.91 E-value=6.4e-08 Score=76.08 Aligned_cols=170 Identities=24% Similarity=0.401 Sum_probs=105.1
Q ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCH-HHHHHHHHHHHHC----CCCCE
Q ss_conf 778748966764116689999999985489883452014455404675306343123-7899999998720----38983
Q gi|254780163|r 224 SKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGD-FEERIKKIVKEIE----SYANA 298 (798)
Q Consensus 224 ~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~-fe~r~~~~~~~~~----~~~~~ 298 (798)
T Consensus 108 ~KsNILliGPTG~GKTlla~tLAk~l---~vPF~iaDAT~l--------TEaGYVGeDVE~ii~~Llq~Ad~dve~Ae~G 176 (411)
T PRK05342 108 QKSNILLIGPTGSGKTLLAQTLARIL---NVPFAIADATTL--------TEAGYVGEDVENILLKLLQAADYDVEKAQRG 176 (411)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEEEECEE--------CCCCCCCCCHHHHHHHHHHHCCCCHHHHHCC
T ss_conf 34538998999977889999999986---999899861200--------1267456079999999999828889988368
Q ss_pred EEEECCHHHHHCCCCCCCCCCCHH------HHHHHHHCCC-----------------------CEEEEEECCHHH-----
Q ss_conf 999736166301554443447778------8887663026-----------------------603887304899-----
Q gi|254780163|r 299 ILYIDEIHTLVGAGSASGISVDAS------NLLKPALSSG-----------------------AVRCIGSTTYSE----- 344 (798)
Q Consensus 299 ilfideih~ligag~~~g~~~d~a------n~lkP~L~rg-----------------------~~~~IgatT~~e----- 344 (798)
T Consensus 177 IV~IDEIDKIarks~~~s~trDVSgEGVQqaLLk-iiEGt~v~vp~~ggrkhp~~~~~~idT~nILFI~gGAF~GL~~II 255 (411)
T PRK05342 177 IVYIDEIDKIARKSENPSITRDVSGEGVQQALLK-ILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKII 255 (411)
T ss_pred EEEEEEHHHHHHCCCCCCCCCCCCCHHHHHHHHH-HHCCCEECCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHH
T ss_conf 2888502345424788888777651248999999-875871411888777787765167614717999115533589999
Q ss_pred -------------------------HHHHHHC-C-------HHHHHHCEE-EEECCCCHHHHHHHHH----HHHHHHHHH
Q ss_conf -------------------------9998520-1-------114320014-4306878689999998----612766541
Q gi|254780163|r 345 -------------------------YRQFFEK-D-------KALVRRFQK-IDVSEPSIEDAIEIVK----GIKPYFEEH 386 (798)
Q Consensus 345 -------------------------y~~~~e~-d-------~al~rrF~~-i~v~ep~~~~~~~iL~----~~~~~ye~~ 386 (798)
T Consensus 256 ~~R~~~~~iGF~~~~~~~~~~~~~~~l~~v~p~DLi~fGlIPEfiGRlPViv~L~~L~~~~L~~ILtePkNaLikQY~~L 335 (411)
T PRK05342 256 KQRLGKSGIGFGAEVKSKDEKDLGELLAQVEPEDLVKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKL 335 (411)
T ss_pred HHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHCCCCHHHHCCCCEEEECCCCCHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 86357887677887664110005678762798788873883776146640546244799999999658741599999999
Q ss_pred C-----CCEECCHHHHHHHHHHHH
Q ss_conf 0-----351211178999998654
Q gi|254780163|r 387 H-----QLRYSKEAIRAAVQLSVR 405 (798)
Q Consensus 387 h-----~v~~~~~al~~av~ls~r 405 (798)
T Consensus 336 F~~dgV~L~Ft~~AL~~IA~~A~~ 359 (411)
T PRK05342 336 FEMDGVELEFTDDALEAIAKKAIE 359 (411)
T ss_pred HHHCCCEEEECHHHHHHHHHHHHH
T ss_conf 975496799868999999999998