HHsearch alignment for GI: 254780163 and conserved domain: PRK05563
>PRK05563 DNA polymerase III subunits gamma and tau; Validated.
Probab=99.22 E-value=2.8e-10 Score=93.04 Aligned_cols=199 Identities=20% Similarity=0.269 Sum_probs=140.8
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCE-EEECCCCCHHHHHHHHHHHHHHCCCCCHH------------HHE--
Q ss_conf 877548611222178999999998622677874-89667641166899999999854898834------------520--
Q gi|254780163|r 196 EKVKKGKVDILVGRHEEINRTIQILCRRSKNNP-LYVGDPGVGKTAIAEGFAKQIVDGMVPDI------------LLG-- 260 (798)
Q Consensus 196 e~AreGKLDPVIGRd~EI~riiqIL~RR~KNn~-~lvG~~gvGktaive~la~~i~~~~vp~~------------l~~-- 260 (798)
T Consensus 8 rkyRP~~f~dvvgQ~~v~~~L~n~i~~~~i~hayLf~GprG~GKTs~Ari~akalnc~~~~~~~pC~~C~~C~~i~~g~~ 87 (541)
T PRK05563 8 REWRPRTFEDVVGQEHITTTLKNQIINNRIAHAYLFCGTRGTGKTSTAKIFAKAVNCLNPQDGEPCNECEICKKINEGLL 87 (541)
T ss_pred HHHCCCCHHHHCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCC
T ss_conf 76489977662484999999999998499320453038799589999999999957999888985751488999856898
Q ss_pred EEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCC---CCC-EEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCC--CCE
Q ss_conf 1445540467530634312378999999987203---898-3999736166301554443447778888766302--660
Q gi|254780163|r 261 ARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIES---YAN-AILYIDEIHTLVGAGSASGISVDASNLLKPALSS--GAV 334 (798)
Q Consensus 261 ~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~---~~~-~ilfideih~ligag~~~g~~~d~an~lkP~L~r--g~~ 334 (798)
T Consensus 88 ~Dv~Eida------as~~gv--d~iR~~~~~~~~~p~~~~~Kv~IiDEvhml---------s~~a~nallKtlEePp~~~ 150 (541)
T PRK05563 88 MDVIEIDA------ASNNGV--DDIREIIENVKYPPQEGKYKVYIMDEVHML---------SQGAVNAFLKTLEEPPSNV 150 (541)
T ss_pred CCEEEECC------CCCCCH--HHHHHHHHHCEECCCCCCEEEEEEECCCCC---------CHHHHHHHHHHHHCCCCCC
T ss_conf 87366244------444788--999999976104876787059999772338---------9999999999985487775
Q ss_pred EEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 38873048999998520111432001443068786899999986127665410351211178999998654201555646
Q gi|254780163|r 335 RCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPD 414 (798)
Q Consensus 335 ~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPd 414 (798)
T Consensus 151 ~Filatte--~~ki~---~tI~SRcq~f~f~~i~~~~i~~~L~~I~~~----E~i~~~~~al~lIa~~s~GsmRD----- 216 (541)
T PRK05563 151 IFILATTD--PQKLP---ITILSRCQRFDFKRIKVKDIFKRLRKIVEE----QGIFADDKSLNLIARMSDGAMRD----- 216 (541)
T ss_pred EEEEECCC--CCCCC---HHHHHHEEEEEEEECCHHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHCCCCHHH-----
T ss_conf 69997698--44274---556742135775438999999999999998----49998789999999745997788-----
Q ss_pred HHHHHHHHHHHH
Q ss_conf 798899865333
Q gi|254780163|r 415 KAIDVIDEAGAS 426 (798)
Q Consensus 415 kAidllDea~a~ 426 (798)
T Consensus 217 -AlslLdQ~is~ 227 (541)
T PRK05563 217 -ALSILDQAISM 227 (541)
T ss_pred -HHHHHHHHHHH
T ss_conf -99999999983