HHsearch alignment for GI: 254780163 and conserved domain: PRK05648

>PRK05648 DNA polymerase III subunits gamma and tau; Reviewed.
Probab=98.71  E-value=2.4e-08  Score=79.14  Aligned_cols=197  Identities=21%  Similarity=0.271  Sum_probs=124.7

Q ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHCCCCCC-EEEECCCCCHHHHHHHHHHHHHHCCCCCHHH-HE-------------E
Q ss_conf             7754861122217899999999862267787-4896676411668999999998548988345-20-------------1
Q gi|254780163|r  197 KVKKGKVDILVGRHEEINRTIQILCRRSKNN-PLYVGDPGVGKTAIAEGFAKQIVDGMVPDIL-LG-------------A  261 (798)
Q Consensus       197 ~AreGKLDPVIGRd~EI~riiqIL~RR~KNn-~~lvG~~gvGktaive~la~~i~~~~vp~~l-~~-------------~  261 (798)
T Consensus         9 k~rp~~f~~~~gq~~~~~~l~~~~~~~~~~~a~l~~g~rg~gkt~~ar~~ak~lnc~~~~~~~pc~~c~~c~~i~~~~~~   88 (705)
T PRK05648          9 KWRPRSFREMVGQTHVLKALINALDNQRLHHAYLFTGTRGVGKTTIARIIAKCLNCETGVSSTPCGECSVCREIDEGRFV   88 (705)
T ss_pred             HHCCCCHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCC
T ss_conf             31787576632819999999999970986304650078988898999999998677899988978776004666248977


Q ss_pred             EEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCC---CCC-EEEEECCHHHHHCCCCCCCCCCCHHH-HHHHHHC--CCCE
Q ss_conf             445540467530634312378999999987203---898-39997361663015544434477788-8876630--2660
Q gi|254780163|r  262 RIFSLDMGNLIAGTRYRGDFEERIKKIVKEIES---YAN-AILYIDEIHTLVGAGSASGISVDASN-LLKPALS--SGAV  334 (798)
Q Consensus       262 ~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~---~~~-~ilfideih~ligag~~~g~~~d~an-~lkP~L~--rg~~  334 (798)
T Consensus        89 d~~e~d~as------~~~v--~~~r~~~~~~~~~p~~~~~kv~~idevhmls---------~~~fnallk-tleepp~~v  150 (705)
T PRK05648         89 DLIEVDAAS------RTKV--EDTRELLDNVQYAPTRGRYKVYLIDEVHMLS---------SHSFNALLK-TLEEPPPHV  150 (705)
T ss_pred             CEEEECCCC------CCCH--HHHHHHHHHCCCCCCCCCEEEEEEEHHHHCC---------HHHHHHHHH-HCCCCCCCE
T ss_conf             634451554------4788--9999999855517767745799984265417---------999999987-404797545


Q ss_pred             EEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHH
Q ss_conf             38873048999998520111432001443068786899999986127665410351211178999998654201555646
Q gi|254780163|r  335 RCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPD  414 (798)
Q Consensus       335 ~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPd  414 (798)
T Consensus       151 ~f~~att~~~--k~--p~t~~sr-c~~~~~~~~~~~~~~~~l~~~~----~~e~~~~~~~~~~~~~~~~~g~~rd-----  216 (705)
T PRK05648        151 KFLLATTDPQ--KL--PVTILSR-CLQFSLKNMSPERVVEHLSHVL----GAENVPFEEDALWLLGRAADGSMRD-----  216 (705)
T ss_pred             EEEEECCCHH--HC--CHHHHHH-HHHCCCCCCCHHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHCCCCHHH-----
T ss_conf             9998428735--37--5899976-6430236899999999999999----9759977899999999974896777-----


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             798899865333
Q gi|254780163|r  415 KAIDVIDEAGAS  426 (798)
Q Consensus       415 kAidllDea~a~  426 (798)
T Consensus       217 -~ls~~dq~~~~  227 (705)
T PRK05648        217 -AMSLTDQAIAF  227 (705)
T ss_pred             -HHHHHHHHHHC
T ss_conf             -99999999860