HHsearch alignment for GI: 254780163 and conserved domain: PRK05707
>PRK05707 DNA polymerase III subunit delta'; Validated.
Probab=97.91 E-value=3.8e-05 Score=56.14 Aligned_cols=159 Identities=17% Similarity=0.242 Sum_probs=90.0
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCHHH-----------------HEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 4896676411668999999998548988345-----------------20144554046753063431237899999998
Q gi|254780163|r 228 PLYVGDPGVGKTAIAEGFAKQIVDGMVPDIL-----------------LGARIFSLDMGNLIAGTRYRGDFEERIKKIVK 290 (798)
Q Consensus 228 ~~lvG~~gvGktaive~la~~i~~~~vp~~l-----------------~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~ 290 (798)
T Consensus 25 ~Lf~G~~G~GK~~lA~~~A~~LlC~~-~~~~~~Cg~C~sC~~~~~~~HPD~~~i~pe~~----~~~I~---IdqIR~l~~ 96 (328)
T PRK05707 25 YLLHGPAGIGKRALAERLAAFLLCEA-PQGGGACGSCKGCQLLAAGSHPDNFVLEPEEA----DKPIK---VDQVRELVS 96 (328)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCC-CCCCCCCCCCHHHHHHHCCCCCCEEEEECCCC----CCCCC---HHHHHHHHH
T ss_conf 64479998679999999999984899-99989998888999987589998799842666----77697---999999999
Q ss_pred HHCC----CCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHCCHHHHHHCEEEEE
Q ss_conf 7203----8983999736166301554443447778888766302--660388730489999985201114320014430
Q gi|254780163|r 291 EIES----YANAILYIDEIHTLVGAGSASGISVDASNLLKPALSS--GAVRCIGSTTYSEYRQFFEKDKALVRRFQKIDV 364 (798)
Q Consensus 291 ~~~~----~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~r--g~~~~IgatT~~ey~~~~e~d~al~rrF~~i~v 364 (798)
T Consensus 97 ~~~~~~~~g~~KV~iI~~Ae~m---------~~~AaNALLKtLEEPp~~t~fiL~t~~~--~~l---LpTI~SRCq~~~~ 162 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAM---------NRNAANALLKSLEEPSGQTVLLLISHQP--SRL---LPTIKSRCQQLAC 162 (328)
T ss_pred HHHHCCCCCCCEEEEEEHHHHH---------CHHHHHHHHHHHHCCCCCEEEEEEECCH--HHC---HHHHHHCCEEEEC
T ss_conf 9831766789579995028773---------8999999999850789875999860993--448---2588741413348
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 6878689999998612766541035121117899999865420155564679889986
Q gi|254780163|r 365 SEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVIDE 422 (798)
Q Consensus 365 ~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdkAidllDe 422 (798)
T Consensus 163 ~~p~~e~~~~~L~~~~~--------~~~~~~a~~ll~la~------G~p~~A~~l~~~ 206 (328)
T PRK05707 163 PLPSNEPSLQWLQQALP--------ESDAEERIELLTLAA------GSPLRALQLHAQ 206 (328)
T ss_pred CCCCHHHHHHHHHHHCC--------CCCHHHHHHHHHHCC------CCHHHHHHHHCC
T ss_conf 99899999999997556--------557899999999749------999999987486