HHsearch alignment for GI: 254780163 and conserved domain: PRK06526
>PRK06526 transposase; Provisional.
Probab=97.94 E-value=6.4e-05 Score=54.49 Aligned_cols=101 Identities=24% Similarity=0.377 Sum_probs=69.8
Q ss_pred EEEEECCCCHHHHHHHHHHHH---HCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHH-CCCEEEEECC
Q ss_conf 688614320038899999873---047733772068861246530110478000256444310035551-5851777404
Q gi|254780163|r 509 CYVFSGPTGVGKTEISKQLAF---ALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQ-NPYSVVLLDE 584 (798)
Q Consensus 509 ~flf~GptGvGKTelak~la~---~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~-~P~sVvl~DE 584 (798)
T Consensus 100 Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~~~~L~~~L~~a~~~------------g~~~~~~~~l~~~dLLIiDe 167 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHA------------GRLQDELVKLGRIPLLIVDE 167 (254)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHC------------CCHHHHHHHHHCCCEEEEEC
T ss_conf 789989999868999999999999869967998779999999998855------------80999999851368776502
Q ss_pred HHH--CCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHH
Q ss_conf 455--028999999998777502177997761254299994242145533
Q gi|254780163|r 585 IEK--SHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMS 632 (798)
Q Consensus 585 iEK--Ah~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~ 632 (798)
T Consensus 168 ~g~~~~~~~~a~~lf~li~~Ry-----e~~------S~IiTSn~~~~~W~ 206 (254)
T PRK06526 168 VGYIPFEAEAANLFFQLVSSRY-----ERA------SLIVTSNKPFGRWG 206 (254)
T ss_pred CCCCCCCHHHHHHHHHHHHHHH-----CCC------CEEEECCCCHHHHH
T ss_conf 1364478899999999999997-----458------86766589866888