HHsearch alignment for GI: 254780163 and conserved domain: PRK06526

>PRK06526 transposase; Provisional.
Probab=97.94  E-value=6.4e-05  Score=54.49  Aligned_cols=101  Identities=24%  Similarity=0.377  Sum_probs=69.8

Q ss_pred             EEEEECCCCHHHHHHHHHHHH---HCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHH-CCCEEEEECC
Q ss_conf             688614320038899999873---047733772068861246530110478000256444310035551-5851777404
Q gi|254780163|r  509 CYVFSGPTGVGKTEISKQLAF---ALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQ-NPYSVVLLDE  584 (798)
Q Consensus       509 ~flf~GptGvGKTelak~la~---~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~-~P~sVvl~DE  584 (798)
T Consensus       100 Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~~~~L~~~L~~a~~~------------g~~~~~~~~l~~~dLLIiDe  167 (254)
T PRK06526        100 NVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHA------------GRLQDELVKLGRIPLLIVDE  167 (254)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHC------------CCHHHHHHHHHCCCEEEEEC
T ss_conf             789989999868999999999999869967998779999999998855------------80999999851368776502


Q ss_pred             HHH--CCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHH
Q ss_conf             455--028999999998777502177997761254299994242145533
Q gi|254780163|r  585 IEK--SHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMS  632 (798)
Q Consensus       585 iEK--Ah~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~  632 (798)
T Consensus       168 ~g~~~~~~~~a~~lf~li~~Ry-----e~~------S~IiTSn~~~~~W~  206 (254)
T PRK06526        168 VGYIPFEAEAANLFFQLVSSRY-----ERA------SLIVTSNKPFGRWG  206 (254)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHH-----CCC------CEEEECCCCHHHHH
T ss_conf             1364478899999999999997-----458------86766589866888