HHsearch alignment for GI: 254780163 and conserved domain: PRK06731
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=97.27 E-value=0.0015 Score=44.63 Aligned_cols=106 Identities=19% Similarity=0.225 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHH-----HCCCCEEEEEH---HHHHCCCCCCHHCC
Q ss_conf 89999999998775204456578740688614320038899999873-----04773377206---88612465301104
Q gi|254780163|r 483 EEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAF-----ALGVQLLRFDM---SEYMERHAVSRLIG 554 (798)
Q Consensus 483 ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~-----~~~~~lir~dm---sey~e~~~vs~LiG 554 (798)
T Consensus 51 ~~vi~~l~~~l~~~~~~~~~~~~~~~vI~lvG~~G~GKTTT~AKLA~~~~~~~~kV~lia~DtyR~aA~eQLk~~a~~l~ 130 (270)
T PRK06731 51 EEVIEYILEDMSSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIG 130 (270)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 99999999999875076654679981899988898988999999999998679908999838888889999999999819
Q ss_pred CCCHHCCCCCCCCCCHHHH----HCCCEEEEECCHHHCCH
Q ss_conf 7800025644431003555----15851777404455028
Q gi|254780163|r 555 APPGYVGFGQGGILADSVD----QNPYSVVLLDEIEKSHP 590 (798)
Q Consensus 555 appGYvG~~egg~Lte~vr----~~P~sVvl~DEiEKAh~ 590 (798)
T Consensus 131 v~~-~~~~~~-~~~~~~~~~~~~~~~~DvilIDTAGR~~~ 168 (270)
T PRK06731 131 FEV-IAVRDE-AAMTRALTYFKEEARVDYILIDTAGKNYR 168 (270)
T ss_pred CCE-ECCCCH-HHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 953-545887-89999999999976999999979998714