HHsearch alignment for GI: 254780163 and conserved domain: PRK07276
>PRK07276 DNA polymerase III subunit delta'; Validated.
Probab=97.69 E-value=0.00039 Score=48.90 Aligned_cols=118 Identities=19% Similarity=0.256 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC--C--CCE-EEEEHHHHHCCCCCCHHC--
Q ss_conf 458999999999877520445657874068861432003889999987304--7--733-772068861246530110--
Q gi|254780163|r 481 GQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL--G--VQL-LRFDMSEYMERHAVSRLI-- 553 (798)
Q Consensus 481 GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~--~--~~l-ir~dmsey~e~~~vs~Li-- 553 (798)
T Consensus 6 ~Qp~i~~~l~~~i~~~--------rl~HAyLf~G--~~Gk~~~A~~~A~~l~C~~~~~~~pCg~C~~C-------~~i~~ 68 (290)
T PRK07276 6 KQPKLFQRFQTILEQD--------RLNHAYLFSG--DFASFEMALFLAQSLFCEQKEDVLPCGHCRSC-------RLIEQ 68 (290)
T ss_pred HHHHHHHHHHHHHHCC--------CCCEEEECCC--CCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHH-------HHHHC
T ss_conf 7899999999999849--------9650542169--86879999999999818999998989889999-------99876
Q ss_pred CCCCHHC---------CCCCCCCCCHHHHHCC----CEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEE
Q ss_conf 4780002---------5644431003555158----51777404455028999999998777502177997761254299
Q gi|254780163|r 554 GAPPGYV---------GFGQGGILADSVDQNP----YSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVIL 620 (798)
Q Consensus 554 GappGYv---------G~~egg~Lte~vr~~P----~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~ii 620 (798)
T Consensus 69 ~~hpDv~~i~~~~~~I~vd~IR~l~~~~~~~~~~g~~KV~II~~Ad~mt~~AaNaLLK~LEEPp-----------~~t~~ 137 (290)
T PRK07276 69 GDFSDVTVIEPQGQVIKTDTIRELTANFSQSGYEGKRQVFIIKDADKMHVNAANSLLKVIEEPQ-----------SEIYI 137 (290)
T ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHCCHHHHHHHHHHHCCCC-----------CCCEE
T ss_conf 9998713771677757688999999998445613782799977656529999999999703898-----------88379
Q ss_pred EEECCC
Q ss_conf 994242
Q gi|254780163|r 621 IMTTNA 626 (798)
Q Consensus 621 i~TsN~ 626 (798)
T Consensus 138 iLlt~~ 143 (290)
T PRK07276 138 FLLTND 143 (290)
T ss_pred EEEECC
T ss_conf 988799