HHsearch alignment for GI: 254780163 and conserved domain: PRK07471
>PRK07471 DNA polymerase III subunit delta'; Validated.
Probab=99.19 E-value=3.5e-10 Score=92.34 Aligned_cols=161 Identities=23% Similarity=0.368 Sum_probs=104.5
Q ss_pred HHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHH-HCC----CCEEEEEH---HHHHCCC
Q ss_conf 466534589999999998775204456578740688614320038899999873-047----73377206---8861246
Q gi|254780163|r 476 GTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAF-ALG----VQLLRFDM---SEYMERH 547 (798)
Q Consensus 476 ~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~-~~~----~~lir~dm---sey~e~~ 547 (798)
T Consensus 16 ~~~liGqe~~~~~L~~a~~~gr--------l~HA~Lf~Gp~GiGK~tlA~~~A~~ll~~~~~~~~~~~~~~~~l~~~~~~ 87 (363)
T PRK07471 16 TTALFGHAAAEAALLDAYRSGR--------LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDAVFPPPASLAVDPDH 87 (363)
T ss_pred CCCCCCHHHHHHHHHHHHHCCC--------CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCC
T ss_conf 2731681999999999998599--------76458767999818899999999998579997777767870531258777
Q ss_pred CCCHHC--CCCCHHCC----CCCCC-C-----CCHHHH-------HCC----CEEEEECCHHHCCHHHHHHHHHHHHHHH
Q ss_conf 530110--47800025----64443-1-----003555-------158----5177740445502899999999877750
Q gi|254780163|r 548 AVSRLI--GAPPGYVG----FGQGG-I-----LADSVD-------QNP----YSVVLLDEIEKSHPDVLNILLQIMDYGI 604 (798)
Q Consensus 548 ~vs~Li--GappGYvG----~~egg-~-----Lte~vr-------~~P----~sVvl~DEiEKAh~~v~~~llqild~G~ 604 (798)
T Consensus 88 p~~r~i~~~~hpdl~~i~r~~d~k~~~~~~~I~Vd~iR~l~~~~~~~p~~g~~kV~IId~ad~mn~~aaNALLK~LEEP- 166 (363)
T PRK07471 88 PVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRETIGFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEP- 166 (363)
T ss_pred CHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHCHHHHHHHHHHHCCC-
T ss_conf 2899995269998466762001133321244539999999999724852489669998687873889999999972158-
Q ss_pred CCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHH
Q ss_conf 21779977612542999942421455330368988211148899999872887881776828962889999999999
Q gi|254780163|r 605 LTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVV 681 (798)
Q Consensus 605 ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~ 681 (798)
T Consensus 167 ----------P~~t~fiLit~~~~~-------------------------llpTI~SRC-q~~~~~~l~~~~~~~~L 207 (363)
T PRK07471 167 ----------PARSLLLLVSHAPAR-------------------------LLPTIRSRC-RKLRLRPLAPEDVIAAL 207 (363)
T ss_pred ----------CCCEEEEEEECCHHH-------------------------CHHHHHHHC-CCCCCCCCCHHHHHHHH
T ss_conf ----------988389986399777-------------------------779999735-24258995999999999