HHsearch alignment for GI: 254780163 and conserved domain: PRK08084
>PRK08084 DNA replication initiation factor; Provisional.
Probab=98.64 E-value=3.7e-06 Score=63.39 Aligned_cols=187 Identities=14% Similarity=0.185 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCE-EEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHH
Q ss_conf 22178999999998622677874-89667641166899999999854898834520144554046753063431237899
Q gi|254780163|r 206 LVGRHEEINRTIQILCRRSKNNP-LYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEER 284 (798)
Q Consensus 206 VIGRd~EI~riiqIL~RR~KNn~-~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r 284 (798)
T Consensus 25 i~g~n~~~~~al~~~~~~~~~~~l~l~G~~G~GKTHLLqA~~~~~~~~-------~~~~~yl~~~~~----------~~~ 87 (235)
T PRK08084 25 YPGDNDSLLAALQNVLRQEHSGYIYLWGREGAGRSHLLHAACAELSQR-------GDAVGYVPLDKR----------AWF 87 (235)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC-------CCCEEEEEHHHH----------HHH
T ss_conf 448869999999999857898769998999988899999999999707-------985799877986----------651
Q ss_pred HHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEE-CCHHHHHHHHHCCHHHHHHCE---
Q ss_conf 9999987203898399973616630155444344777888876630266038873-048999998520111432001---
Q gi|254780163|r 285 IKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGS-TTYSEYRQFFEKDKALVRRFQ--- 360 (798)
Q Consensus 285 ~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~~Iga-tT~~ey~~~~e~d~al~rrF~--- 360 (798)
T Consensus 88 ~~~~l~~l~~~--dll~iDDi~~i~g~~~~ee---~lF~l~N~~~~~g~~~ll~ts~~~P~~l~~~l--~DL~SRl~~g~ 160 (235)
T PRK08084 88 VPEVLEGMEQL--SLVCIDNIECIAGDELWEM---AIFDLYNRILESGKTRLLITGDRPPRQLNLGL--PDLASRLDWGQ 160 (235)
T ss_pred HHHHHHHHHHC--CEEEEECHHHHCCCHHHHH---HHHHHHHHHHHHCCCEEEEECCCCHHHCCCCC--HHHHHHHHCCC
T ss_conf 79999876418--9899827455469978999---99999999998489669996798824302312--88999995697
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 443068786899999986127665410351211178999998654201555646798899865
Q gi|254780163|r 361 KIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVIDEA 423 (798)
Q Consensus 361 ~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdkAidllDea 423 (798)
T Consensus 161 ~~~i~~~dde~~~~iL~~~----a~~rgl~l~~~V~~yl~~~~~R~~~~---L~~~l~~Ld~~ 216 (235)
T PRK08084 161 IYKLQPLSDEEKLQALQLR----ARLRGFELPEDVGRFLLKRLDREMRT---LFMTLDQLDKA 216 (235)
T ss_pred EEEECCCCHHHHHHHHHHH----HHHCCCCCCHHHHHHHHHHCCCCHHH---HHHHHHHHHHH
T ss_conf 2785599989999999999----99739999989999999861588999---99999999999