HHsearch alignment for GI: 254780163 and conserved domain: PRK08939

Probab=98.07  E-value=6.2e-05  Score=54.62  Aligned_cols=126  Identities=22%  Similarity=0.274  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC---CCCEEEEEHHHHHCCCCCCHHCCCCCHH
Q ss_conf             8999999999877520445657874068861432003889999987304---7733772068861246530110478000
Q gi|254780163|r  483 EEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL---GVQLLRFDMSEYMERHAVSRLIGAPPGY  559 (798)
Q Consensus       483 ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~---~~~lir~dmsey~e~~~vs~LiGappGY  559 (798)
T Consensus       138 ~~a~~~a~~F~~~y~-----~~~~~kGlyl~G~~G~GKTyL~~aian~La~~g~~v~~v~~p~~~~~lK~--s~~d----  206 (306)
T PRK08939        138 LDALMAALDFLEAYK-----PGEKVKGLYLYGDFGVGKTYLLAAIANELAKKGVSSTLVHFPEFIRELKN--AISD----  206 (306)
T ss_pred             HHHHHHHHHHHHHHC-----CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHH--HHCC----
T ss_conf             999999999999737-----69888778898999998999999999999986992999875999999999--8648----


Q ss_pred             CCCCCCCCCCHHHHHCCCEEEEECCH--HHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHH
Q ss_conf             25644431003555158517774044--550289999999987775021779977612542999942421455330
Q gi|254780163|r  560 VGFGQGGILADSVDQNPYSVVLLDEI--EKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSK  633 (798)
Q Consensus       560 vG~~egg~Lte~vr~~P~sVvl~DEi--EKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~  633 (798)
T Consensus       207 ---~s~~~~i~~~k~~~--vLiLDDiGaE~~t~W~rd~vl~~IL~~Rm~~~l---------PTffTSN~~~~eLe~  268 (306)
T PRK08939        207 ---GSVKEKIDAVKEAP--VLMLDDIGAEQMSSWVRDEVLGVILQYRMQEEL---------PTFFTSNFDFDELEH  268 (306)
T ss_pred             ---CCHHHHHHHHHCCC--EEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCC---------CEEEECCCCHHHHHH
T ss_conf             ---98899999984499--899844465426777899899999999997499---------979977999999999