HHsearch alignment for GI: 254780163 and conserved domain: PRK08939
>PRK08939 primosomal protein DnaI; Reviewed.
Probab=96.57 E-value=0.074 Score=32.48 Aligned_cols=124 Identities=19% Similarity=0.269 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHCCC----CCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCC---CCCH
Q ss_conf 17899999999862267----7874896676411668999999998548988345201445540467530634---3123
Q gi|254780163|r 208 GRHEEINRTIQILCRRS----KNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTR---YRGD 280 (798)
Q Consensus 208 GRd~EI~riiqIL~RR~----KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~---~rg~ 280 (798)
T Consensus 136 ~R~~a~~~a~~F~~~y~~~~~~kGlyl~G~~G~GKTyL~~aian~La~~g~-------~v~~v~~p~~~~~lK~s~~d~s 208 (306)
T PRK08939 136 DRLDALMAALDFLEAYKPGEKVKGLYLYGDFGVGKTYLLAAIANELAKKGV-------SSTLVHFPEFIRELKNAISDGS 208 (306)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCC-------EEEEEEHHHHHHHHHHHHCCCC
T ss_conf 899999999999997376988877889899999899999999999998699-------2999875999999999864898
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHC---CCCEEEEEEC--CHHHHHHHHH
Q ss_conf 78999999987203898399973616630155444344777888876630---2660388730--4899999852
Q gi|254780163|r 281 FEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALS---SGAVRCIGST--TYSEYRQFFE 350 (798)
Q Consensus 281 fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~---rg~~~~Igat--T~~ey~~~~e 350 (798)
T Consensus 209 ~~~----~i~~~k~~--~vLiLDDi----GaE--~~t~W~rd~vl~~IL~~Rm~~~lPTffTSN~~~~eLe~~l~ 271 (306)
T PRK08939 209 VKE----KIDAVKEA--PVLMLDDI----GAE--QMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEHHLA 271 (306)
T ss_pred HHH----HHHHHHCC--CEEEEECC----CCC--CCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
T ss_conf 899----99998449--98998444----654--26777899899999999997499979977999999999986