HHsearch alignment for GI: 254780163 and conserved domain: PRK09111
>PRK09111 DNA polymerase III subunits gamma and tau; Validated.
Probab=99.01 E-value=1.2e-08 Score=81.23 Aligned_cols=211 Identities=21% Similarity=0.254 Sum_probs=138.1
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHCCCCCC-EEEECCCCCHHHHHHHHHHHHHHCCC-----CC--HH-----------
Q ss_conf 7754861122217899999999862267787-48966764116689999999985489-----88--34-----------
Q gi|254780163|r 197 KVKKGKVDILVGRHEEINRTIQILCRRSKNN-PLYVGDPGVGKTAIAEGFAKQIVDGM-----VP--DI----------- 257 (798)
Q Consensus 197 ~AreGKLDPVIGRd~EI~riiqIL~RR~KNn-~~lvG~~gvGktaive~la~~i~~~~-----vp--~~----------- 257 (798)
T Consensus 16 k~rp~~f~~~~gq~~~~~~l~~~~~~~~~~~a~l~~g~rg~gktt~ari~a~~lnc~~~~~~~~~~~~~c~~c~~c~~i~ 95 (600)
T PRK09111 16 KYRPQTFDDLIGQEAMVRTLRNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYKGPDGVGGPTIDPCGVGEHCQAIM 95 (600)
T ss_pred CCCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 01798776633859999999999972984204764578987899999999999669887666899889899886589886
Q ss_pred -HHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCC---CC-EEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHC--
Q ss_conf -52014455404675306343123789999999872038---98-399973616630155444344777888876630--
Q gi|254780163|r 258 -LLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESY---AN-AILYIDEIHTLVGAGSASGISVDASNLLKPALS-- 330 (798)
Q Consensus 258 -l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~---~~-~ilfideih~ligag~~~g~~~d~an~lkP~L~-- 330 (798)
T Consensus 96 ~~~~~d~~e~daa------s~~~v--~~~r~~~~~~~~~p~~~~~kv~iidevhml---------s~~afnallktleep 158 (600)
T PRK09111 96 EGRHVDVIEMDAA------SHTGV--DDIREIIESVRYRPVSARYKVYIIDEVHML---------STAAFNALLKTLEEP 158 (600)
T ss_pred CCCCCCEEEEECC------CCCCH--HHHHHHHHHHCCCCCCCCEEEEEEECCCCC---------CHHHHHHHHHHHHCC
T ss_conf 6899875885155------45788--899999986053887775469996001105---------799999999876259
Q ss_pred CCCEEEEEECCHHHHHHHHHCCH-HHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCC
Q ss_conf 26603887304899999852011-14320014430687868999999861276654103512111789999986542015
Q gi|254780163|r 331 SGAVRCIGSTTYSEYRQFFEKDK-ALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTS 409 (798)
Q Consensus 331 rg~~~~IgatT~~ey~~~~e~d~-al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~ 409 (798)
T Consensus 159 p~~~~fi~att~--~~k----~p~ti~src~~f~~~~~~~~~~~~~l~~i~~----~e~~~~~~~al~~ia~~a~GS~RD 228 (600)
T PRK09111 159 PPHVKFIFATTE--IRK----VPVTVLSRCQRFDLRRIEAEVLAAHLARIAE----KEGVEVEPDALALIARAAEGSVRD 228 (600)
T ss_pred CCCEEEEEECCC--HHH----CCHHHHHHHHEECCCCCCHHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHCCCCCCH
T ss_conf 865499996285--343----7589985441201057999999999999998----607686677999999974898421
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 556467988998653333211443221136578999866
Q gi|254780163|r 410 RKLPDKAIDVIDEAGASQILQPLSKRRKFITEKDIKKTI 448 (798)
Q Consensus 410 r~lPdkAidllDea~a~~~~~~~~~~~~~~~~~~i~~~~ 448 (798)
T Consensus 229 ------aLSlLDQai~~--------~~~~i~~~~v~~mL 253 (600)
T PRK09111 229 ------GLSLLDQAIAH--------GAGEVTAEQVRDML 253 (600)
T ss_pred ------HHHHHHHHHHC--------CCCCCCHHHHHHHH
T ss_conf ------89999999972--------79875699999986