HHsearch alignment for GI: 254780163 and conserved domain: PRK09112
>PRK09112 DNA polymerase III subunit delta'; Validated.
Probab=98.25 E-value=0.00011 Score=52.91 Aligned_cols=197 Identities=18% Similarity=0.221 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCE-EEECCCCCHHHHHHHHHHHHHHCCC----CCHHHHEEEEEEEEHHHHHCCCC--
Q ss_conf 1222178999999998622677874-8966764116689999999985489----88345201445540467530634--
Q gi|254780163|r 204 DILVGRHEEINRTIQILCRRSKNNP-LYVGDPGVGKTAIAEGFAKQIVDGM----VPDILLGARIFSLDMGNLIAGTR-- 276 (798)
Q Consensus 204 DPVIGRd~EI~riiqIL~RR~KNn~-~lvG~~gvGktaive~la~~i~~~~----vp~~l~~~~i~~ld~~~l~ag~~-- 276 (798)
T Consensus 23 ~~liGq~~~~~~L~~a~~~gRl~HA~Lf~GP~GiGKaTlA~~~A~~Ll~~~~~~~~~~~~~~pd~~~~~~r~i~~g~hpd 102 (352)
T PRK09112 23 NRLFGHEEARAFLAQAYREGRLHHALLFEGPEGIGKATLAFHLANHILSHPDPNEAPETLADPDPASPLWRQIAQGAHPN 102 (352)
T ss_pred HHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC
T ss_conf 46278699999999999849965246535899808999999999998669986668655678887877899997489999
Q ss_pred --------------CCCHH-HHHHHHHHHHHCC----CCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCC--CCEE
Q ss_conf --------------31237-8999999987203----8983999736166301554443447778888766302--6603
Q gi|254780163|r 277 --------------YRGDF-EERIKKIVKEIES----YANAILYIDEIHTLVGAGSASGISVDASNLLKPALSS--GAVR 335 (798)
Q Consensus 277 --------------~rg~f-e~r~~~~~~~~~~----~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~r--g~~~ 335 (798)
T Consensus 103 l~~i~r~~d~k~~~~~~~I~vd~iR~l~~~~~~~~~~~~~kv~Iid~ad~m---------~~~aaNALLK~LEEPp~~~~ 173 (352)
T PRK09112 103 LLHLTRPFDEKTGKFKTAITVDEIRRVTHFLSQTSGDGNWRIVIIDPADDM---------NRNAANAILKTLEEPPARAL 173 (352)
T ss_pred EEEEECCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHH---------HHHHHHHHHHHHHCCCCCEE
T ss_conf 565534322021454335777999999998454886688069998187874---------69999999998534898748
Q ss_pred EEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 88730489999985201114320014430687868999999861276654103512111789999986542015556467
Q gi|254780163|r 336 CIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDK 415 (798)
Q Consensus 336 ~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdk 415 (798)
T Consensus 174 fiLit~~~~--~ll---~TI~SRCq~~~f~pL~~~di~~~L~~i~~~----~~~-~~~~~~~~l~~~a~G------S~~~ 237 (352)
T PRK09112 174 FILISHSSG--RLL---PTIRSRCQPISLKPLDDDELKKALSHLGSK----QGI-SAGEETEALLQRSEG------SVRK 237 (352)
T ss_pred EEEEECCHH--HCH---HHHHHHCCCCCCCCCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHCC------CHHH
T ss_conf 998869977--776---899974332148893989999999987512----689-987999999987089------9889
Q ss_pred HHHHHHHHHH
Q ss_conf 9889986533
Q gi|254780163|r 416 AIDVIDEAGA 425 (798)
Q Consensus 416 AidllDea~a 425 (798)
T Consensus 238 Al~L~~~~gl 247 (352)
T PRK09112 238 ALLLLNYGGL 247 (352)
T ss_pred HHHHHCCCHH
T ss_conf 9987448779