HHsearch alignment for GI: 254780163 and conserved domain: PRK09862
>PRK09862 putative ATP-dependent protease; Provisional.
Probab=99.07 E-value=6.5e-09 Score=83.18 Aligned_cols=225 Identities=21% Similarity=0.311 Sum_probs=122.7
Q ss_pred HHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCC---------CEE-----------E
Q ss_conf 65345899999999987752044565787406886143200388999998730477---------337-----------7
Q gi|254780163|r 478 VVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGV---------QLL-----------R 537 (798)
Q Consensus 478 ~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~---------~li-----------r 537 (798)
T Consensus 192 dv~Gq~~akra----leIAAAGgH-------nlLl~GpPG~GKTMlA~rlp~ILPpLt~~e~lEv~~I~Svag~~~~~~~ 260 (506)
T PRK09862 192 DVVGQEQGKRG----LEITAAGGH-------NLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQ 260 (506)
T ss_pred HHCCCHHHHHH----HHHHHCCCC-------CEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 53697999999----999744688-------6598769994598999775123899898999999999987189877775
Q ss_pred EEHHHHHCCCCCCHHCCCCCHHCCCC---CCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCC-CCEE
Q ss_conf 20688612465301104780002564---4431003555158517774044550289999999987775021779-9776
Q gi|254780163|r 538 FDMSEYMERHAVSRLIGAPPGYVGFG---QGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQS-GKKI 613 (798)
Q Consensus 538 ~dmsey~e~~~vs~LiGappGYvG~~---egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~-Gr~v 613 (798)
T Consensus 261 ~~~rPfR~PHHs~----S~~aliGGG~~~~PGEIS----LAH~GVLFLDElpEF~r~vLe~LRqPLE~g~I~IsRa~~~~ 332 (506)
T PRK09862 261 WRQRPFRSPHHSA----SLTAMVGGGAIPGPGEIS----LAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKI 332 (506)
T ss_pred CCCCCEECCCCCC----CHHHHHCCCCCCCCCCEE----ECCCCEEEECCHHCCCHHHHHHHHHHHCCCEEEEEECCCEE
T ss_conf 4668503788765----476663799999997222----13575788455000688899987762247759999668679
Q ss_pred CC-CCEEEEEECCCCHHHHHHCCCCC-CCCCC--HHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHH---------H
Q ss_conf 12-54299994242145533036898-82111--488999998728878817768289628899999999---------9
Q gi|254780163|r 614 SF-RNVILIMTTNAGALEMSKARIGF-GSSRN--DDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQ---------V 680 (798)
Q Consensus 614 df-~n~iii~TsN~G~~~~~~~~~g~-~~~~~--~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~---------i 680 (798)
T Consensus 333 ~~PA~F~LVaAmNP-------CPCG~~~~~~~~Ct~~~~~rY~~rlSGPllDRiDl~v~v~~~~~~~l~~~~~~~esS~~ 405 (506)
T PRK09862 333 TYPARFQLVAAMNP-------SPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSAT 405 (506)
T ss_pred EECCHHHHEHHCCC-------CCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHCEEEEEECCCCCHHHHHCCCCCCCCHHH
T ss_conf 86153311110378-------88888999977789899999986566221303647998168996666324898988899
Q ss_pred HHHHHHHHHHHHHHC-------------CCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 999999999999866-------------988999889999999718981015326799999
Q gi|254780163|r 681 VHKFIMKLELQLQEK-------------GISFHFSEEVINWLVSHGYDVKMGARPLERIIK 728 (798)
Q Consensus 681 ~~~~l~~l~~~l~~~-------------~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~ 728 (798)
T Consensus 406 ir~rV~~Ar~~q~~R~~~~Na~l~~~~l~~~~~l~~~~~~~L~~a~~~~~lS~R~~~riLr 466 (506)
T PRK09862 406 VKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLK 466 (506)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 9999999999999855165657998999765499978999999999965957999999999