HHsearch alignment for GI: 254780163 and conserved domain: PRK10365
>PRK10365 transcriptional regulatory protein ZraR; Provisional.
Probab=99.62 E-value=1.4e-12 Score=109.57 Aligned_cols=349 Identities=17% Similarity=0.193 Sum_probs=220.6
Q ss_pred CEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHHHCEEEE--ECCCCHHHHHH
Q ss_conf 8399973616630155444344777888876630266038873048999998520111432001443--06878689999
Q gi|254780163|r 297 NAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRFQKID--VSEPSIEDAIE 374 (798)
Q Consensus 297 ~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~~IgatT~~ey~~~~e~d~al~rrF~~i~--v~ep~~~~~~~ 374 (798)
T Consensus 6 ~~ILIVDDd-------------~~~~~~l~~~L~~~G~~v~~a~~~~~al~~l~~~-----~~DlvllD~~mp~~-~Gl~ 66 (441)
T PRK10365 6 IDILVVDDD-------------ISHCTILQALLRGWGYNVALANSGRQALEQVREQ-----VFDLVLCDVRMAEM-DGIA 66 (441)
T ss_pred CEEEEECCC-------------HHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC-----CCCEEEECCCCCCC-CHHH
T ss_conf 859998398-------------9999999999997799899989999999998648-----99999988999999-8999
Q ss_pred HHHHHHHHHHHHCCCEECC----HHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 9986127665410351211----178999998-65420155564679889986533332114432211365789998663
Q gi|254780163|r 375 IVKGIKPYFEEHHQLRYSK----EAIRAAVQL-SVRHFTSRKLPDKAIDVIDEAGASQILQPLSKRRKFITEKDIKKTIA 449 (798)
Q Consensus 375 iL~~~~~~ye~~h~v~~~~----~al~~av~l-s~ryi~~r~lPdkAidllDea~a~~~~~~~~~~~~~~~~~~i~~~~~ 449 (798)
T Consensus 67 lL~~l~~~~p~~pvIviT~~~~~~~av~A~k~GA~Dyl~KP~~~~~L~~~i~~al~~~~~~--------------~---- 128 (441)
T PRK10365 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI--------------D---- 128 (441)
T ss_pred HHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHH--------------H----
T ss_conf 9999984298982899969999899999998285123407888999999999999999876--------------5----
Q ss_pred HCCCCCCHHHHHCCHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHH
Q ss_conf 10245310111001123342100002466534589999999998775204456578740688614320038899999873
Q gi|254780163|r 450 SMNRSIHTTSFSRDDDSVLSNLEKNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAF 529 (798)
Q Consensus 450 ~~~~gip~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~ 529 (798)
T Consensus 129 ~---~~~~~--------------~~~~~~liG~S~am~~v~~~i~~~----A~s~~p---VLI~GE~GTGK~~~Ar~IH~ 184 (441)
T PRK10365 129 A---ETPAV--------------SASQFGMVGKSPAMQHLLSEIALV----APSEAT---VLIHGDSGTGKELVARAIHA 184 (441)
T ss_pred H---CCHHC--------------CCCCCCCEECCHHHHHHHHHHHHH----HCCCCC---EEEECCCCHHHHHHHHHHHH
T ss_conf 2---00001--------------222578666899999999999998----488994---89989998109999999996
Q ss_pred HC---CCCEEEEEHHHHHCCCCCCHHCCCCCHH-CCCC--CCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHH
Q ss_conf 04---7733772068861246530110478000-2564--4431003555158517774044550289999999987775
Q gi|254780163|r 530 AL---GVQLLRFDMSEYMERHAVSRLIGAPPGY-VGFG--QGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYG 603 (798)
Q Consensus 530 ~~---~~~lir~dmsey~e~~~vs~LiGappGY-vG~~--egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G 603 (798)
T Consensus 185 ~S~r~~~pfv~vnC~~l~~~l~eseLFG~~~gaftga~~~~~g~~----~~A~gGTLfLdeI~~l~~~~Q~kLl~~l~~~ 260 (441)
T PRK10365 185 SSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRF----VEADGGTLFLDEIGDISPMMQVRLLRAIQER 260 (441)
T ss_pred CCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCE----EECCCCEECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 578778980798789898455589861775568789653468987----7889982550231529999999999877752
Q ss_pred HCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEE-EECCCCC--HHHHHHH
Q ss_conf 021779977612542999942421455330368988211148899999872887881776828-9628899--9999999
Q gi|254780163|r 604 ILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSI-IPFFPLS--SDIIRQV 680 (798)
Q Consensus 604 ~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~i-i~F~~l~--~~~~~~i 680 (798)
T Consensus 261 ~~~~~g~~~~~~~d~RiIaat~~~l~------------------~~v~~g~Fr~dLy~rL~~~~i~lPpLReR~eDI~~L 322 (441)
T PRK10365 261 EVQRVGSNQTISVDVRLIAATHRDLA------------------AEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLL 322 (441)
T ss_pred HHCCCCCCCEEECCCEEEECCCCCHH------------------HHHHCCCCHHHHHHHHCCHHCCCCCCCCCCCHHHHH
T ss_conf 10005887344136379983788999------------------998819825899988601113782600062009999
Q ss_pred HHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999999999998669889998899999997189810153267999998623
Q gi|254780163|r 681 VHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGARPLERIIKEHVK 732 (798)
Q Consensus 681 ~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~ 732 (798)
T Consensus 323 ~~~fl~~~~~~~~~--~~~~~s~~a~~~L~~y~WPG--NvREL~n~iera~~ 370 (441)
T PRK10365 323 AGHFLQRFAERNRK--AVKGFTPQAMDLLIHYDWPG--NIRELENAVERAVV 370 (441)
T ss_pred HHHHHHHHHHHCCC--CCCCCCHHHHHHHHCCCCCC--HHHHHHHHHHHHHH
T ss_conf 99999999998499--98888999999997099998--99999999999999