HHsearch alignment for GI: 254780163 and conserved domain: PRK10820
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional.
Probab=99.39 E-value=3.3e-11 Score=99.71 Aligned_cols=215 Identities=20% Similarity=0.287 Sum_probs=156.8
Q ss_pred HHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC---CCCEEEEEHHHHHCCCCCCHH
Q ss_conf 46653458999999999877520445657874068861432003889999987304---773377206886124653011
Q gi|254780163|r 476 GTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL---GVQLLRFDMSEYMERHAVSRL 552 (798)
Q Consensus 476 ~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~---~~~lir~dmsey~e~~~vs~L 552 (798)
T Consensus 203 F~~iig~S~~m~~v~~~a~r~----A~~d~p---VLI~GEsGTGKellAraIH~~S~R~~~pFv~vnC~alp~~l~eseL 275 (513)
T PRK10820 203 FSQIVAVSPKMKHVVEQARKL----AMLSAP---LLITGDTGTGKDLFAYACHLASPRAKKPYLALNCASIPEDAVESEL 275 (513)
T ss_pred HHHHEECCHHHHHHHHHHHHH----HCCCCC---EEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHH
T ss_conf 777510899999999999998----598998---8998989824999999999668878998268889989967899986
Q ss_pred CCCCCHHCCCCCCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCC---CCCCEECCCCEEEEEECCCCHH
Q ss_conf 0478000256444310035551585177740445502899999999877750217---7997761254299994242145
Q gi|254780163|r 553 IGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTD---QSGKKISFRNVILIMTTNAGAL 629 (798)
Q Consensus 553 iGappGYvG~~egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd---~~Gr~vdf~n~iii~TsN~G~~ 629 (798)
T Consensus 276 FG~a~----~~~~G~fe----~A~gGTLfLdEI~~l~~~~Q~kLLr~Lq~~~~~rvG~~~~~~~---dvRiIaaT~~d-- 342 (513)
T PRK10820 276 FGHAP----EGKKGFFE----QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHV---DVRVICATQKN-- 342 (513)
T ss_pred CCCCC----CCCCCCEE----ECCCCEEEEECHHHCCHHHHHHHHHHHHCCEEEECCCCCEEEE---EEEEEECCCHH--
T ss_conf 38766----68897557----8589889997836599999999999986897996599853567---78999626530--
Q ss_pred HHHHCCCCCCCCCCHHHHHHHH-HHHCCHHHHCCCCEEE-ECCCCC--HHHHHHHHHHHHHHHHHHHHHCCCEEEECHHH
Q ss_conf 5330368988211148899999-8728878817768289-628899--99999999999999999998669889998899
Q gi|254780163|r 630 EMSKARIGFGSSRNDDADKEAL-RNFLSPEFLNRLDSII-PFFPLS--SDIIRQVVHKFIMKLELQLQEKGISFHFSEEV 705 (798)
Q Consensus 630 ~~~~~~~g~~~~~~~~~~~~~l-~~~f~peflnRid~ii-~F~~l~--~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~ 705 (798)
T Consensus 343 -----------------L~~lv~~g~FReDLyyRL~v~~I~lPpLReR~eDI~~L~~~fl~~~~~~~g~~--~~~ls~~a 403 (513)
T PRK10820 343 -----------------LVELVQKGLFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVP--RPKLSADL 403 (513)
T ss_pred -----------------HHHHHHCCCCCHHHHHHHHCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCC--CCCCCHHH
T ss_conf -----------------99998729850889998616725588834465569999999999999975999--89847999
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99999718981015326799999862
Q gi|254780163|r 706 INWLVSHGYDVKMGARPLERIIKEHV 731 (798)
Q Consensus 706 ~~~l~~~~~~~~~GAR~l~r~i~~~i 731 (798)
T Consensus 404 ~~~L~~y~WP--GNVREL~n~iera~ 427 (513)
T PRK10820 404 STVLTRYGWP--GNVRQLKNAIYRAL 427 (513)
T ss_pred HHHHHHCCCC--CHHHHHHHHHHHHH
T ss_conf 9999708999--79999999999999