HHsearch alignment for GI: 254780163 and conserved domain: PRK11331
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional.
Probab=98.35 E-value=2.4e-06 Score=64.71 Aligned_cols=213 Identities=21% Similarity=0.335 Sum_probs=113.9
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHC--CCCEEEEEHHHHHCCCCCCHHC-CCCCHHCCCC-CCCCC---CHHHHHCC
Q ss_conf 7874068861432003889999987304--7733772068861246530110-4780002564-44310---03555158
Q gi|254780163|r 504 NKPIGCYVFSGPTGVGKTEISKQLAFAL--GVQLLRFDMSEYMERHAVSRLI-GAPPGYVGFG-QGGIL---ADSVDQNP 576 (798)
Q Consensus 504 ~rP~g~flf~GptGvGKTelak~la~~~--~~~lir~dmsey~e~~~vs~Li-GappGYvG~~-egg~L---te~vr~~P 576 (798)
T Consensus 193 tKkn--vIL~G~pGtGKT~lAk~lA~~l~g~~~~~rv~~VqfhpsysYEDfi~Gyrp~~~gf~~~~G~f~~~~~~A~~~p 270 (459)
T PRK11331 193 IKKN--IILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQP 270 (459)
T ss_pred CCCC--EEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHCCCCCCCCCCEECCCHHHHHHHHHHHCC
T ss_conf 5882--79658999887899999999970788778468998358866178764605688861326836999999998498
Q ss_pred --CEEEEECCHHHCCHH-HHHHHHHHHHHHHCCC--------CC--CCEEC-CCCEEEEEECCCCHHHHHHCCCCCCCCC
Q ss_conf --517774044550289-9999999877750217--------79--97761-2542999942421455330368988211
Q gi|254780163|r 577 --YSVVLLDEIEKSHPD-VLNILLQIMDYGILTD--------QS--GKKIS-FRNVILIMTTNAGALEMSKARIGFGSSR 642 (798)
Q Consensus 577 --~sVvl~DEiEKAh~~-v~~~llqild~G~ltd--------~~--Gr~vd-f~n~iii~TsN~G~~~~~~~~~g~~~~~ 642 (798)
T Consensus 271 ~~~y~~iideinr~~~~~~fgel~~liE~dkR~~~~~~~l~ys~~~~~~f~vP~Nl~iigtmNtadrs~----------- 339 (459)
T PRK11331 271 EKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSL----------- 339 (459)
T ss_pred CCCEEEEEEHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEECCCCCEEEEEECCCCCHHH-----------
T ss_conf 987699984320338899999999996412567652256300368885334688659998503341068-----------
Q ss_pred CHHHHHHHHHHHCCHHHHCCCCE--EEECCC------CCHHHHHHHHHHHHHHHHHHHHH------CCCEEEECHHHHHH
Q ss_conf 14889999987288788177682--896288------99999999999999999999986------69889998899999
Q gi|254780163|r 643 NDDADKEALRNFLSPEFLNRLDS--IIPFFP------LSSDIIRQVVHKFIMKLELQLQE------KGISFHFSEEVINW 708 (798)
Q Consensus 643 ~~~~~~~~l~~~f~peflnRid~--ii~F~~------l~~~~~~~i~~~~l~~l~~~l~~------~~i~l~~~~~~~~~ 708 (798)
T Consensus 340 --~~~d~alrRrf~--f~~~~pd~d~~~~~~~l~~~~~~~~-~~~~l~~~l~~LN~rI~~de~lLgrd~~I--GHS---Y 409 (459)
T PRK11331 340 --AVVDYALRRRFS--FIDIEPGFDTPQFRNFLLNKKAEPS-FVESLCQKMNELNQEISKEATILGKGFRI--GHS---Y 409 (459)
T ss_pred --HHHHHHHHHHHC--CEECCCCCCHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHCCCCCCCCCEE--CHH---H
T ss_conf --878999986502--1215898660555433320343314-79999999999999986321137998772--103---2
Q ss_pred HHHCCCC-CCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9971898-101532679999986235999999
Q gi|254780163|r 709 LVSHGYD-VKMGARPLERIIKEHVKVPLADEI 739 (798)
Q Consensus 709 l~~~~~~-~~~GAR~l~r~i~~~i~~~la~~i 739 (798)
T Consensus 410 F~~~~~~~~~~~~~~L~~I~~~eIiPLLqEYf 441 (459)
T PRK11331 410 FCCGLEDGTSPDTQWLREIVMTDIAPLLEEYF 441 (459)
T ss_pred HCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHC
T ss_conf 06665556643689999999853278778870