HHsearch alignment for GI: 254780163 and conserved domain: PRK11331

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional.
Probab=98.18  E-value=1.4e-05  Score=59.25  Aligned_cols=147  Identities=24%  Similarity=0.288  Sum_probs=90.7

Q ss_pred             HHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEE-EEEHHHHHCCCCC-CCHHH---HHHHH
Q ss_conf             9999998622677874896676411668999999998548988345201445-5404675306343-12378---99999
Q gi|254780163|r  213 INRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIF-SLDMGNLIAGTRY-RGDFE---ERIKK  287 (798)
Q Consensus       213 I~riiqIL~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~-~ld~~~l~ag~~~-rg~fe---~r~~~  287 (798)
T Consensus       184 i~~~--~~sLktKknvIL~G~pGtGKT~lAk~lA~~l~g~~~~~rv~~VqfhpsysYEDfi~Gyrp~~~gf~~~~G~f~~  261 (459)
T PRK11331        184 IETI--LKRLTIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYN  261 (459)
T ss_pred             HHHH--HHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHCCCCCCCCCCEECCCHHHH
T ss_conf             9999--99854588279658999887899999999970788778468998358866178764605688861326836999


Q ss_pred             HHHHHCCCC--CEEEEECCHH------------HHHCCCCCCCCCCCHHHHHHHHHC--------CCCEEEEEECCHHHH
Q ss_conf             998720389--8399973616------------630155444344777888876630--------266038873048999
Q gi|254780163|r  288 IVKEIESYA--NAILYIDEIH------------TLVGAGSASGISVDASNLLKPALS--------SGAVRCIGSTTYSEY  345 (798)
Q Consensus       288 ~~~~~~~~~--~~ilfideih------------~ligag~~~g~~~d~an~lkP~L~--------rg~~~~IgatT~~ey  345 (798)
T Consensus       262 ~~~~A~~~p~~~y~~iideinr~~~~~~fgel~~liE~dkR~~-~~---~~~l~ys~~~~~~f~vP~Nl~iigtmNtad-  336 (459)
T PRK11331        262 FCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGE-NW---SVPLTYSENDEERFYVPENVYIIGLMNTAD-  336 (459)
T ss_pred             HHHHHHHCCCCCEEEEEEHHHCCCHHHHHHHHHHHHHHCCCCC-CC---EEEEECCCCCCCEECCCCCEEEEEECCCCC-
T ss_conf             9999984989876999843203388999999999964125676-52---256300368885334688659998503341-


Q ss_pred             HHHHHCCHHHHHHCEEEEECC
Q ss_conf             998520111432001443068
Q gi|254780163|r  346 RQFFEKDKALVRRFQKIDVSE  366 (798)
Q Consensus       346 ~~~~e~d~al~rrF~~i~v~e  366 (798)
T Consensus       337 rs~~~~d~alrRrf~f~~~~p  357 (459)
T PRK11331        337 RSLAVVDYALRRRFSFIDIEP  357 (459)
T ss_pred             HHHHHHHHHHHHHHCCEECCC
T ss_conf             068878999986502121589