HHsearch alignment for GI: 254780163 and conserved domain: PRK11388
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional.
Probab=99.45 E-value=6.3e-12 Score=104.86 Aligned_cols=219 Identities=17% Similarity=0.264 Sum_probs=158.7
Q ss_pred HHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC---CCCEEEEEHHHHHCCCCCCHHCC
Q ss_conf 653458999999999877520445657874068861432003889999987304---77337720688612465301104
Q gi|254780163|r 478 VVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL---GVQLLRFDMSEYMERHAVSRLIG 554 (798)
Q Consensus 478 ~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~---~~~lir~dmsey~e~~~vs~LiG 554 (798)
T Consensus 326 ~l~g~s~~~~~~~~~a~~~----a~~~~p---VLI~GE~GtGKe~lAraIH~~S~r~~~pfv~vnC~ai~~~~~e~elfG 398 (639)
T PRK11388 326 HMPQDSPQMRRLIHFGRQA----AKSSFP---ILLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLLPDEALAEEFLG 398 (639)
T ss_pred HCCCCCHHHHHHHHHHHHH----HCCCCC---EEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHCC
T ss_conf 4467999999999999999----688996---898898981099999999955777899818987898984678998738
Q ss_pred CCCHHCCCCCCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHC
Q ss_conf 78000256444310035551585177740445502899999999877750217799776125429999424214553303
Q gi|254780163|r 555 APPGYVGFGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKA 634 (798)
Q Consensus 555 appGYvG~~egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~ 634 (798)
T Consensus 399 ~~~~---~~~~g~~g-~~e~A~gGTL~LdeI~~lp~~~Q~~LlrvL~~~~~~r~g~~~~~~vdvRiiaat~~~l------ 468 (639)
T PRK11388 399 SDRT---DSENGRLS-KFELAHGGTLFLEKVEYLSVELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADL------ 468 (639)
T ss_pred CCCC---CCCCCCCC-HHHCCCCCEEEECCHHHCCHHHHHHHHHHHHCCCEEECCCCCEEEEEEEEEEECCHHH------
T ss_conf 7767---64346686-2440369828846726499999999999986593785699946664279997364508------
Q ss_pred CCCCCCCCCHHHHHHHH-HHHCCHHHHCCCCEE-EECCCCCH--HHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHH
Q ss_conf 68988211148899999-872887881776828-96288999--999999999999999999866988999889999999
Q gi|254780163|r 635 RIGFGSSRNDDADKEAL-RNFLSPEFLNRLDSI-IPFFPLSS--DIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLV 710 (798)
Q Consensus 635 ~~g~~~~~~~~~~~~~l-~~~f~peflnRid~i-i~F~~l~~--~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~ 710 (798)
T Consensus 469 -------------~~~v~~g~fr~dLyyrl~~~~i~lPpLReR~~Di~~L~~~~l~~~~~~~---~~~~~ls~~a~~~L~ 532 (639)
T PRK11388 469 -------------AMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRF---STRLKIDDDALARLV 532 (639)
T ss_pred -------------HHHHHCCCCHHHHHHHHHHHHCCCCCHHHCHHHHHHHHHHHHHHHHHHC---CCCCCCCHHHHHHHH
T ss_conf -------------9998749854999987674410573323253439999999999999971---999998999999997
Q ss_pred HCCCCCCCCCHHHHHHHHHHH
Q ss_conf 718981015326799999862
Q gi|254780163|r 711 SHGYDVKMGARPLERIIKEHV 731 (798)
Q Consensus 711 ~~~~~~~~GAR~l~r~i~~~i 731 (798)
T Consensus 533 ~y~WPGN--vrEL~nvl~~a~ 551 (639)
T PRK11388 533 SYRWPGN--DFELRSVIENLA 551 (639)
T ss_pred CCCCCCH--HHHHHHHHHHHH
T ss_conf 2899979--999999999999