HHsearch alignment for GI: 254780163 and conserved domain: PRK11608
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional.
Probab=99.51 E-value=7.4e-13 Score=111.56 Aligned_cols=226 Identities=20% Similarity=0.327 Sum_probs=159.9
Q ss_pred HHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC---CCCEEEEEHHHHHCCCCCC
Q ss_conf 0246653458999999999877520445657874068861432003889999987304---7733772068861246530
Q gi|254780163|r 474 NLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL---GVQLLRFDMSEYMERHAVS 550 (798)
Q Consensus 474 ~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~---~~~lir~dmsey~e~~~vs 550 (798)
T Consensus 3 ~~~~~liG~S~~m~~v~~~~~~~----A~~~~pV---LI~GE~GtGK~~~Ar~IH~~S~r~~~pfi~v~C~~l~~~~~e~ 75 (325)
T PRK11608 3 EYKDNLLGEANSFLEVLEQVSHL----APLDKPV---LIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDS 75 (325)
T ss_pred CCCCCCEECCHHHHHHHHHHHHH----HCCCCCE---EEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHH
T ss_conf 77899858999999999999999----6889998---9889898379999999996588679997788779899778899
Q ss_pred HHCCCCCH-HCCCCCCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHH
Q ss_conf 11047800-02564443100355515851777404455028999999998777502177997761254299994242145
Q gi|254780163|r 551 RLIGAPPG-YVGFGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGAL 629 (798)
Q Consensus 551 ~LiGappG-YvG~~egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~ 629 (798)
T Consensus 76 ~LFG~~~g~~~~~~~~--~~g~le~a~gGTL~L~eI~~l~~~~Q~~Ll~~l~~~~~~r~g~~~~~~~~~RiIa~t~~~l~ 153 (325)
T PRK11608 76 ELFGHEAGAFTGAQKR--HPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLP 153 (325)
T ss_pred HHCCCCCCCCCCCCCC--CCCHHHCCCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEECCCCCCCCCCEEEEECCCHHHH
T ss_conf 8727755676775324--68734356898699737454799999999999864908857998766564688713322089
Q ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEE-EECCCCC--HHHHHHHHHHHHHHHHHHHHHCCCEE--EECHH
Q ss_conf 5330368988211148899999872887881776828-9628899--99999999999999999998669889--99889
Q gi|254780163|r 630 EMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSI-IPFFPLS--SDIIRQVVHKFIMKLELQLQEKGISF--HFSEE 704 (798)
Q Consensus 630 ~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~i-i~F~~l~--~~~~~~i~~~~l~~l~~~l~~~~i~l--~~~~~ 704 (798)
T Consensus 154 ------------------~lv~~g~fr~dLy~rL~~~~I~lPpLReR~eDI~~L~~~fl~~~~~~~---~~~~~~~~s~~ 212 (325)
T PRK11608 154 ------------------AMVNEGTFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCREL---GLPLFPGFTER 212 (325)
T ss_pred ------------------HHHHHCCCHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHC---CCCCCCCCCHH
T ss_conf ------------------999839567999856530111586845471019999999999999982---99988888999
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 999999718981015326799999862
Q gi|254780163|r 705 VINWLVSHGYDVKMGARPLERIIKEHV 731 (798)
Q Consensus 705 ~~~~l~~~~~~~~~GAR~l~r~i~~~i 731 (798)
T Consensus 213 a~~~L~~y~WPGN--vrEL~n~ierav 237 (325)
T PRK11608 213 ARETLLNYRWPGN--IRELKNVVERSV 237 (325)
T ss_pred HHHHHHCCCCCCH--HHHHHHHHHHHH
T ss_conf 9999961999965--999999999999