HHsearch alignment for GI: 254780163 and conserved domain: PRK11823

>PRK11823 DNA repair protein RadA; Provisional.
Probab=96.63  E-value=0.00051  Score=48.05  Aligned_cols=195  Identities=22%  Similarity=0.357  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHHCCCCCCEEEE-CCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCH--------
Q ss_conf             8999999998622677874896-6764116689999999985489883452014455404675306343123--------
Q gi|254780163|r  210 HEEINRTIQILCRRSKNNPLYV-GDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGD--------  280 (798)
Q Consensus       210 d~EI~riiqIL~RR~KNn~~lv-G~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~--------  280 (798)
T Consensus        76 i~ElDRVLG--GGlV~GS~iLlgGePGIGKSTLlLQ~a~~la~~--------~~vLYvSGEES~~Qik~RA~RLg~~~~~  145 (454)
T PRK11823         76 IGELDRVLG--GGLVPGSVVLIGGDPGIGKSTLLLQVAAALAAG--------GKVLYVSGEESLQQIKLRAERLGLPSDN  145 (454)
T ss_pred             CHHHHHCCC--CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCC--------CCEEEECCCHHHHHHHHHHHHHCCCCCC
T ss_conf             556652215--872066489950799888999999999998559--------9579981501578999999975888887


Q ss_pred             ----HHHHHHHHHHHHCCCCCEEEEECCHHHHHCCC--CCCCCCC----C-HHHHHHHHHCCCC-EEEEEECCHHHHHHH
Q ss_conf             ----78999999987203898399973616630155--4443447----7-7888876630266-038873048999998
Q gi|254780163|r  281 ----FEERIKKIVKEIESYANAILYIDEIHTLVGAG--SASGISV----D-ASNLLKPALSSGA-VRCIGSTTYSEYRQF  348 (798)
Q Consensus       281 ----fe~r~~~~~~~~~~~~~~ilfideih~ligag--~~~g~~~----d-~an~lkP~L~rg~-~~~IgatT~~ey~~~  348 (798)
T Consensus       146 l~l~~et~l~~Il~~i~~~~P~~lIIDSIQT~~~~~~~s~pG-svsQVre~a~~L~~~AK~~~i~~~lVGHVTKdG---~  221 (454)
T PRK11823        146 LYLLAETNLEDILATIEEEKPDLVVIDSIQTMYSPELESAPG-SVSQVRECAAELTRLAKQSGIAVFLVGHVTKEG---A  221 (454)
T ss_pred             CEEEECCCHHHHHHHHHHHCCCEEEEECHHEEEECCCCCCCC-CHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCC---C
T ss_conf             378853689999999986099889994311154156677899-789999999999999974498289999772677---6


Q ss_pred             HHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCE---ECCHHHHHHHHHHHHHCCCC--CCHHHHHH
Q ss_conf             520111432001443068786899999986127665410351---21117899999865420155--56467988
Q gi|254780163|r  349 FEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLR---YSKEAIRAAVQLSVRHFTSR--KLPDKAID  418 (798)
Q Consensus       349 ~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~---~~~~al~~av~ls~ryi~~r--~lPdkAid  418 (798)
T Consensus       222 iAGPkvLEHmVDtVl~fEGd~~~~~RiLR~~KNRFG~t~EiGvFeM~~~GL~~v~nPS~~Fls~~~~~~~Gs~i~  296 (454)
T PRK11823        222 IAGPRVLEHMVDTVLYFEGDRHSRFRILRAVKNRFGATNEIGVFEMTEKGLREVSNPSELFLSERDENVPGSAVT  296 (454)
T ss_pred             CCCCHHHHHHHCEEEEECCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCEECCCHHHHHHHCCCCCCCCEEEE
T ss_conf             466145222010468751576655024563124677666058998616884566887799862688787750799