HHsearch alignment for GI: 254780163 and conserved domain: PRK11823
>PRK11823 DNA repair protein RadA; Provisional.
Probab=96.63 E-value=0.00051 Score=48.05 Aligned_cols=195 Identities=22% Similarity=0.357 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHCCCCCCEEEE-CCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCH--------
Q ss_conf 8999999998622677874896-6764116689999999985489883452014455404675306343123--------
Q gi|254780163|r 210 HEEINRTIQILCRRSKNNPLYV-GDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGD-------- 280 (798)
Q Consensus 210 d~EI~riiqIL~RR~KNn~~lv-G~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~-------- 280 (798)
T Consensus 76 i~ElDRVLG--GGlV~GS~iLlgGePGIGKSTLlLQ~a~~la~~--------~~vLYvSGEES~~Qik~RA~RLg~~~~~ 145 (454)
T PRK11823 76 IGELDRVLG--GGLVPGSVVLIGGDPGIGKSTLLLQVAAALAAG--------GKVLYVSGEESLQQIKLRAERLGLPSDN 145 (454)
T ss_pred CHHHHHCCC--CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCC--------CCEEEECCCHHHHHHHHHHHHHCCCCCC
T ss_conf 556652215--872066489950799888999999999998559--------9579981501578999999975888887
Q ss_pred ----HHHHHHHHHHHHCCCCCEEEEECCHHHHHCCC--CCCCCCC----C-HHHHHHHHHCCCC-EEEEEECCHHHHHHH
Q ss_conf ----78999999987203898399973616630155--4443447----7-7888876630266-038873048999998
Q gi|254780163|r 281 ----FEERIKKIVKEIESYANAILYIDEIHTLVGAG--SASGISV----D-ASNLLKPALSSGA-VRCIGSTTYSEYRQF 348 (798)
Q Consensus 281 ----fe~r~~~~~~~~~~~~~~ilfideih~ligag--~~~g~~~----d-~an~lkP~L~rg~-~~~IgatT~~ey~~~ 348 (798)
T Consensus 146 l~l~~et~l~~Il~~i~~~~P~~lIIDSIQT~~~~~~~s~pG-svsQVre~a~~L~~~AK~~~i~~~lVGHVTKdG---~ 221 (454)
T PRK11823 146 LYLLAETNLEDILATIEEEKPDLVVIDSIQTMYSPELESAPG-SVSQVRECAAELTRLAKQSGIAVFLVGHVTKEG---A 221 (454)
T ss_pred CEEEECCCHHHHHHHHHHHCCCEEEEECHHEEEECCCCCCCC-CHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCC---C
T ss_conf 378853689999999986099889994311154156677899-789999999999999974498289999772677---6
Q ss_pred HHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCE---ECCHHHHHHHHHHHHHCCCC--CCHHHHHH
Q ss_conf 520111432001443068786899999986127665410351---21117899999865420155--56467988
Q gi|254780163|r 349 FEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLR---YSKEAIRAAVQLSVRHFTSR--KLPDKAID 418 (798)
Q Consensus 349 ~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~---~~~~al~~av~ls~ryi~~r--~lPdkAid 418 (798)
T Consensus 222 iAGPkvLEHmVDtVl~fEGd~~~~~RiLR~~KNRFG~t~EiGvFeM~~~GL~~v~nPS~~Fls~~~~~~~Gs~i~ 296 (454)
T PRK11823 222 IAGPRVLEHMVDTVLYFEGDRHSRFRILRAVKNRFGATNEIGVFEMTEKGLREVSNPSELFLSERDENVPGSAVT 296 (454)
T ss_pred CCCCHHHHHHHCEEEEECCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCEECCCHHHHHHHCCCCCCCCEEEE
T ss_conf 466145222010468751576655024563124677666058998616884566887799862688787750799