HHsearch alignment for GI: 254780163 and conserved domain: PRK11889
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional.
Probab=96.68 E-value=0.0035 Score=42.06 Aligned_cols=95 Identities=20% Similarity=0.272 Sum_probs=52.6
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHH--HHC---CCCEEEEEH---HHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHH--
Q ss_conf 874068861432003889999987--304---773377206---8861246530110478000256444310035551--
Q gi|254780163|r 505 KPIGCYVFSGPTGVGKTEISKQLA--FAL---GVQLLRFDM---SEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQ-- 574 (798)
Q Consensus 505 rP~g~flf~GptGvGKTelak~la--~~~---~~~lir~dm---sey~e~~~vs~LiGappGYvG~~egg~Lte~vr~-- 574 (798)
T Consensus 239 ~~~q~IALVGPTGVGKTTTIAKLAArf~~~~KkVALITtDTYRIGAVEQLKTYAeIMgVPV-~VV~d-p~eL~~AL~~lk 316 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEV-IAVRD-EAAMTRALTYFK 316 (436)
T ss_pred HHCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCE-EEECC-HHHHHHHHHHHH
T ss_conf 4171799989999888999999999986169808999806634769999999999849943-99688-899999999876
Q ss_pred --CCCEEEEECCHHHCCHHHHHH--HHHHHH
Q ss_conf --585177740445502899999--999877
Q gi|254780163|r 575 --NPYSVVLLDEIEKSHPDVLNI--LLQIMD 601 (798)
Q Consensus 575 --~P~sVvl~DEiEKAh~~v~~~--llqild 601 (798)
T Consensus 317 dka~~DLILIDTAGRS~RD~~~I~EL~~~l~ 347 (436)
T PRK11889 317 EEARVDYILIDTAGKNYRASETVEEMIETMG 347 (436)
T ss_pred HCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 3368888999298988468999999999985