HHsearch alignment for GI: 254780163 and conserved domain: PRK12377
>PRK12377 putative replication protein; Provisional.
Probab=98.63 E-value=6.2e-07 Score=68.99 Aligned_cols=122 Identities=25% Similarity=0.340 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHH---HCCCCEEEEEHHHHHCCCCCCHHCCCCC
Q ss_conf 4589999999998775204456578740688614320038899999873---0477337720688612465301104780
Q gi|254780163|r 481 GQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAF---ALGVQLLRFDMSEYMERHAVSRLIGAPP 557 (798)
Q Consensus 481 GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~---~~~~~lir~dmsey~e~~~vs~LiGapp 557 (798)
T Consensus 82 ~~~~a~~~a~~~~----~~F~~---~~~NlIf~G~pGtGKTHLA~AIg~~a~~~G~sVlF~t~~dLv~-----~L~~a-- 147 (248)
T PRK12377 82 GQRYALSQAKSIA----DELMT---GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMS-----RLHES-- 147 (248)
T ss_pred HHHHHHHHHHHHH----HHHHC---CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHH-----HHHHH--
T ss_conf 8999999999999----98731---8860899899998788999999999998799699988999999-----99999--
Q ss_pred HHCCCCCCCCCCHH-HH-HCCCEEEEECCH--HHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHH
Q ss_conf 00256444310035-55-158517774044--5502899999999877750217799776125429999424214553
Q gi|254780163|r 558 GYVGFGQGGILADS-VD-QNPYSVVLLDEI--EKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEM 631 (798)
Q Consensus 558 GYvG~~egg~Lte~-vr-~~P~sVvl~DEi--EKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~ 631 (798)
T Consensus 148 ----~~~-g~~~~k~l~~l~~~dLLIIDElG~~~~s~~~~~llfqlI~~Ry~~-~---------ks~IiTTNL~f~ew 210 (248)
T PRK12377 148 ----YDN-GQSGEKFLQELCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTAS-M---------RSVGMLTNLNHEAM 210 (248)
T ss_pred ----HHC-CCCHHHHHHHHHCCCEEEEHHCCCCCCCHHHHHHHHHHHHHHHHC-C---------CCEEEECCCCHHHH
T ss_conf ----984-850999999973389898600057889867999999999999855-7---------98689758997799