HHsearch alignment for GI: 254780163 and conserved domain: PRK13341
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed.
Probab=99.69 E-value=6.1e-16 Score=133.73 Aligned_cols=179 Identities=27% Similarity=0.400 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHH
Q ss_conf 22217899999999862267787489667641166899999999854898834520144554046753063431237899
Q gi|254780163|r 205 ILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEER 284 (798)
Q Consensus 205 PVIGRd~EI~riiqIL~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r 284 (798)
T Consensus 35 hllg~g~~Lrr~i~---~~~~~S~Il~GPPGtGKTTLA~iIA~~t----------~~~F~~ls--Av~sgv-------kd 92 (726)
T PRK13341 35 HILGEGRLLRRAIK---ADRVGSLILYGPPGVGKTTLARIIANHT----------RAHFSSLN--AVLAGV-------KD 92 (726)
T ss_pred HHCCCCCHHHHHHH---CCCCCEEEEECCCCCCHHHHHHHHHHHH----------CCCEEEEE--CCCCCH-------HH
T ss_conf 54289828999997---6999827888979999999999998874----------88679985--620377-------99
Q ss_pred HHHHHHHHCC----C-CCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHHHC
Q ss_conf 9999987203----8-9839997361663015544434477788887663026603887304899999852011143200
Q gi|254780163|r 285 IKKIVKEIES----Y-ANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRF 359 (798)
Q Consensus 285 ~~~~~~~~~~----~-~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~~IgatT~~ey~~~~e~d~al~rrF 359 (798)
T Consensus 93 lr~ii~~A~~~~~~~g~~tILFIDEIHRfN---K------~QQD~LLp~vE~G~i~LIGATTENP~---F~vn~ALlSR~ 160 (726)
T PRK13341 93 LRAEVDAAKERLERHGKRTILFIDEVHRFN---K------AQQDALLPWVENGTVTLIGATTENPY---FEVNKALVSRS 160 (726)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECHHHCC---H------HHHHHHHHHHCCCEEEEEEECCCCCC---EEECHHHHHHC
T ss_conf 999999999998745996599986254258---8------78998788860683899970478974---36429888323
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHH---HCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 14430687868999999861276654---10351211178999998654201555646798899865
Q gi|254780163|r 360 QKIDVSEPSIEDAIEIVKGIKPYFEE---HHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVIDEA 423 (798)
Q Consensus 360 ~~i~v~ep~~~~~~~iL~~~~~~ye~---~h~v~~~~~al~~av~ls~ryi~~r~lPdkAidllDea 423 (798)
T Consensus 161 ~vf~L~~L~~~dl~~il~rAl~d~~~g~~~~~i~i~~~al~~l~~~s~GD------aR~aLN~LEla 221 (726)
T PRK13341 161 RLFRLKSLEDEDLHQLLKRALQDKERGYGDRNIDLEPEAEKHLVDVANGD------ARSLLNALELA 221 (726)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCC------HHHHHHHHHHH
T ss_conf 46674389999999999999876743256678775989999999975973------99999999999