HHsearch alignment for GI: 254780163 and conserved domain: PRK13341

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed.
Probab=99.69  E-value=6.1e-16  Score=133.73  Aligned_cols=179  Identities=27%  Similarity=0.400  Sum_probs=131.3

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHH
Q ss_conf             22217899999999862267787489667641166899999999854898834520144554046753063431237899
Q gi|254780163|r  205 ILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEER  284 (798)
Q Consensus       205 PVIGRd~EI~riiqIL~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r  284 (798)
T Consensus        35 hllg~g~~Lrr~i~---~~~~~S~Il~GPPGtGKTTLA~iIA~~t----------~~~F~~ls--Av~sgv-------kd   92 (726)
T PRK13341         35 HILGEGRLLRRAIK---ADRVGSLILYGPPGVGKTTLARIIANHT----------RAHFSSLN--AVLAGV-------KD   92 (726)
T ss_pred             HHCCCCCHHHHHHH---CCCCCEEEEECCCCCCHHHHHHHHHHHH----------CCCEEEEE--CCCCCH-------HH
T ss_conf             54289828999997---6999827888979999999999998874----------88679985--620377-------99


Q ss_pred             HHHHHHHHCC----C-CCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHHHC
Q ss_conf             9999987203----8-9839997361663015544434477788887663026603887304899999852011143200
Q gi|254780163|r  285 IKKIVKEIES----Y-ANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRF  359 (798)
Q Consensus       285 ~~~~~~~~~~----~-~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~~IgatT~~ey~~~~e~d~al~rrF  359 (798)
T Consensus        93 lr~ii~~A~~~~~~~g~~tILFIDEIHRfN---K------~QQD~LLp~vE~G~i~LIGATTENP~---F~vn~ALlSR~  160 (726)
T PRK13341         93 LRAEVDAAKERLERHGKRTILFIDEVHRFN---K------AQQDALLPWVENGTVTLIGATTENPY---FEVNKALVSRS  160 (726)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEEECHHHCC---H------HHHHHHHHHHCCCEEEEEEECCCCCC---EEECHHHHHHC
T ss_conf             999999999998745996599986254258---8------78998788860683899970478974---36429888323


Q ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHH---HCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf             14430687868999999861276654---10351211178999998654201555646798899865
Q gi|254780163|r  360 QKIDVSEPSIEDAIEIVKGIKPYFEE---HHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVIDEA  423 (798)
Q Consensus       360 ~~i~v~ep~~~~~~~iL~~~~~~ye~---~h~v~~~~~al~~av~ls~ryi~~r~lPdkAidllDea  423 (798)
T Consensus       161 ~vf~L~~L~~~dl~~il~rAl~d~~~g~~~~~i~i~~~al~~l~~~s~GD------aR~aLN~LEla  221 (726)
T PRK13341        161 RLFRLKSLEDEDLHQLLKRALQDKERGYGDRNIDLEPEAEKHLVDVANGD------ARSLLNALELA  221 (726)
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCC------HHHHHHHHHHH
T ss_conf             46674389999999999999876743256678775989999999975973------99999999999