HHsearch alignment for GI: 254780163 and conserved domain: PRK13341
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed.
Probab=99.41 E-value=6.2e-12 Score=104.90 Aligned_cols=99 Identities=16% Similarity=0.211 Sum_probs=49.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCC----CCCCHHHHHH------HHHHCHHHH-HHHH-HCCCCHHHHHHHHHHHHHHCC
Q ss_conf 973438999999999999998289----9511999999------982074689-9999-859998999999999964136
Q gi|254780163|r 1 MSFFSENLEKVLHQALVLANERNH----EYATLEHLLL------ALIDDSDAA-IVML-SCNVDLKVLKNNLLNYIDNDS 68 (798)
Q Consensus 1 M~mfS~~a~~vL~~A~~lAk~~~H----~~Vt~EHLLL------aLL~d~~~~-~iL~-~~giD~~~Lk~~Le~~L~~~~ 68 (798)
T Consensus 1 mdlf~~~~~~~~~~~aPLA~rmRP~~Lde~vGQ~hllg~g~~Lrr~i~~~~~~S~Il~GPPGtGK----TTLA~iIA~~t 76 (726)
T PRK13341 1 MDLFAFHGEQQRRSEAPLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGK----TTLARIIANHT 76 (726)
T ss_pred CCHHHHHHHHHHHCCCCCHHHHCCCCHHHHCCCHHHCCCCCHHHHHHHCCCCCEEEEECCCCCCH----HHHHHHHHHHH
T ss_conf 96155647765332698568629998777359575428982899999769998278889799999----99999998874
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 545778886776469899999999999999809981
Q gi|254780163|r 69 SNKLKNGFRVECKPTSSFQRVVQRAVLHVQSTGRGI 104 (798)
Q Consensus 69 ~~~~~~~~~~ei~~S~~l~rVL~~A~~~A~~~G~~~ 104 (798)
T Consensus 77 ~~~F~~l-sAv~sgvkdlr~ii~~A~~~~~~~g~~t 111 (726)
T PRK13341 77 RAHFSSL-NAVLAGVKDLRAEVDAAKERLERHGKRT 111 (726)
T ss_pred CCCEEEE-ECCCCCHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 8867998-5620377999999999999987459965