HHsearch alignment for GI: 254780163 and conserved domain: PRK13341

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed.
Probab=99.41  E-value=6.2e-12  Score=104.90  Aligned_cols=99  Identities=16%  Similarity=0.211  Sum_probs=49.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHCCC----CCCCHHHHHH------HHHHCHHHH-HHHH-HCCCCHHHHHHHHHHHHHHCC
Q ss_conf             973438999999999999998289----9511999999------982074689-9999-859998999999999964136
Q gi|254780163|r    1 MSFFSENLEKVLHQALVLANERNH----EYATLEHLLL------ALIDDSDAA-IVML-SCNVDLKVLKNNLLNYIDNDS   68 (798)
Q Consensus         1 M~mfS~~a~~vL~~A~~lAk~~~H----~~Vt~EHLLL------aLL~d~~~~-~iL~-~~giD~~~Lk~~Le~~L~~~~   68 (798)
T Consensus         1 mdlf~~~~~~~~~~~aPLA~rmRP~~Lde~vGQ~hllg~g~~Lrr~i~~~~~~S~Il~GPPGtGK----TTLA~iIA~~t   76 (726)
T PRK13341          1 MDLFAFHGEQQRRSEAPLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGK----TTLARIIANHT   76 (726)
T ss_pred             CCHHHHHHHHHHHCCCCCHHHHCCCCHHHHCCCHHHCCCCCHHHHHHHCCCCCEEEEECCCCCCH----HHHHHHHHHHH
T ss_conf             96155647765332698568629998777359575428982899999769998278889799999----99999998874


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             545778886776469899999999999999809981
Q gi|254780163|r   69 SNKLKNGFRVECKPTSSFQRVVQRAVLHVQSTGRGI  104 (798)
Q Consensus        69 ~~~~~~~~~~ei~~S~~l~rVL~~A~~~A~~~G~~~  104 (798)
T Consensus        77 ~~~F~~l-sAv~sgvkdlr~ii~~A~~~~~~~g~~t  111 (726)
T PRK13341         77 RAHFSSL-NAVLAGVKDLRAEVDAAKERLERHGKRT  111 (726)
T ss_pred             CCCEEEE-ECCCCCHHHHHHHHHHHHHHHHHCCCCE
T ss_conf             8867998-5620377999999999999987459965