HHsearch alignment for GI: 254780163 and conserved domain: PRK13342
>PRK13342 recombination factor protein RarA; Reviewed.
Probab=99.51 E-value=5.8e-13 Score=112.32 Aligned_cols=183 Identities=21% Similarity=0.339 Sum_probs=125.3
Q ss_pred HHHHCHHHHHHH---HHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHC
Q ss_conf 665345899999---99998775204456578740688614320038899999873047733772068861246530110
Q gi|254780163|r 477 TVVYGQEEAIKK---LSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLI 553 (798)
Q Consensus 477 ~~v~GQ~~ai~~---v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~Li 553 (798)
T Consensus 13 de~vGQ~hllg~~~~L~~~i~--------~~~~-~s~Il~GPPG~GKTTlA~iiA~~~~~~f~~lnA~~----~gv~dir 79 (417)
T PRK13342 13 DEVVGQEHLLGPGKPLRRMIE--------AGRL-SSMILWGPPGTGKTTLARIIAGATDAEFEALSAVT----SGVKDLR 79 (417)
T ss_pred HHHCCCHHHHCCCHHHHHHHH--------CCCC-CEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC----CCHHHHH
T ss_conf 885798776089719999997--------6999-75998896999899999999998689889961410----3889999
Q ss_pred CCCCHHCCCCCCCCCCHHHHHC---CCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHH
Q ss_conf 4780002564443100355515---8517774044550289999999987775021779977612542999942421455
Q gi|254780163|r 554 GAPPGYVGFGQGGILADSVDQN---PYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALE 630 (798)
Q Consensus 554 GappGYvG~~egg~Lte~vr~~---P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~ 630 (798)
T Consensus 80 -------------~ii~~a~~~~~~~~tilfiDEIHRfnK~QQD~LLp~vE~g~i------------iLIgATTE----- 129 (417)
T PRK13342 80 -------------EVIEEAKQSRLGRRTILFIDEIHRFNKAQQDALLPHVEDGTI------------TLIGATTE----- 129 (417)
T ss_pred -------------HHHHHHHHHHCCCCEEEEEECHHHCCHHHHHHHHHHHHCCCE------------EEEEECCC-----
T ss_conf -------------999998863148965999978200588999999875112656------------99974157-----
Q ss_pred HHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHH
Q ss_conf 33036898821114889999987288788177682896288999999999999999999999866988999889999999
Q gi|254780163|r 631 MSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLV 710 (798)
Q Consensus 631 ~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~ 710 (798)
T Consensus 130 -----------NP~f~--------in~aLlSRc-~vf~l~~L~~~di~~iL~ral~~-e---~~~~~~i~i~~~al~~i~ 185 (417)
T PRK13342 130 -----------NPSFE--------VNPALLSRA-QVFELKPLSEEDLEQLLKRALED-E---RGLGRKLELDDEALDALA 185 (417)
T ss_pred -----------CCHHH--------CCHHHHHHH-HHEECCCCCHHHHHHHHHHHHHH-H---HCCCCCCCCCHHHHHHHH
T ss_conf -----------92253--------489898565-70020589999999999999987-7---433788776999999999
Q ss_pred HCCCCCCCCCHHHHHHHHH
Q ss_conf 7189810153267999998
Q gi|254780163|r 711 SHGYDVKMGARPLERIIKE 729 (798)
Q Consensus 711 ~~~~~~~~GAR~l~r~i~~ 729 (798)
T Consensus 186 ~~s~G---DaR~aLN~LE~ 201 (417)
T PRK13342 186 RLADG---DARRALNLLEL 201 (417)
T ss_pred HHCCC---CHHHHHHHHHH
T ss_conf 81498---59999999999