HHsearch alignment for GI: 254780163 and conserved domain: PRK13342

>PRK13342 recombination factor protein RarA; Reviewed.
Probab=99.51  E-value=5.8e-13  Score=112.32  Aligned_cols=183  Identities=21%  Similarity=0.339  Sum_probs=125.3

Q ss_pred             HHHHCHHHHHHH---HHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHC
Q ss_conf             665345899999---99998775204456578740688614320038899999873047733772068861246530110
Q gi|254780163|r  477 TVVYGQEEAIKK---LSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLI  553 (798)
Q Consensus       477 ~~v~GQ~~ai~~---v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~Li  553 (798)
T Consensus        13 de~vGQ~hllg~~~~L~~~i~--------~~~~-~s~Il~GPPG~GKTTlA~iiA~~~~~~f~~lnA~~----~gv~dir   79 (417)
T PRK13342         13 DEVVGQEHLLGPGKPLRRMIE--------AGRL-SSMILWGPPGTGKTTLARIIAGATDAEFEALSAVT----SGVKDLR   79 (417)
T ss_pred             HHHCCCHHHHCCCHHHHHHHH--------CCCC-CEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC----CCHHHHH
T ss_conf             885798776089719999997--------6999-75998896999899999999998689889961410----3889999


Q ss_pred             CCCCHHCCCCCCCCCCHHHHHC---CCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHH
Q ss_conf             4780002564443100355515---8517774044550289999999987775021779977612542999942421455
Q gi|254780163|r  554 GAPPGYVGFGQGGILADSVDQN---PYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALE  630 (798)
Q Consensus       554 GappGYvG~~egg~Lte~vr~~---P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~  630 (798)
T Consensus        80 -------------~ii~~a~~~~~~~~tilfiDEIHRfnK~QQD~LLp~vE~g~i------------iLIgATTE-----  129 (417)
T PRK13342         80 -------------EVIEEAKQSRLGRRTILFIDEIHRFNKAQQDALLPHVEDGTI------------TLIGATTE-----  129 (417)
T ss_pred             -------------HHHHHHHHHHCCCCEEEEEECHHHCCHHHHHHHHHHHHCCCE------------EEEEECCC-----
T ss_conf             -------------999998863148965999978200588999999875112656------------99974157-----


Q ss_pred             HHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHH
Q ss_conf             33036898821114889999987288788177682896288999999999999999999999866988999889999999
Q gi|254780163|r  631 MSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLV  710 (798)
Q Consensus       631 ~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~  710 (798)
T Consensus       130 -----------NP~f~--------in~aLlSRc-~vf~l~~L~~~di~~iL~ral~~-e---~~~~~~i~i~~~al~~i~  185 (417)
T PRK13342        130 -----------NPSFE--------VNPALLSRA-QVFELKPLSEEDLEQLLKRALED-E---RGLGRKLELDDEALDALA  185 (417)
T ss_pred             -----------CCHHH--------CCHHHHHHH-HHEECCCCCHHHHHHHHHHHHHH-H---HCCCCCCCCCHHHHHHHH
T ss_conf             -----------92253--------489898565-70020589999999999999987-7---433788776999999999


Q ss_pred             HCCCCCCCCCHHHHHHHHH
Q ss_conf             7189810153267999998
Q gi|254780163|r  711 SHGYDVKMGARPLERIIKE  729 (798)
Q Consensus       711 ~~~~~~~~GAR~l~r~i~~  729 (798)
T Consensus       186 ~~s~G---DaR~aLN~LE~  201 (417)
T PRK13342        186 RLADG---DARRALNLLEL  201 (417)
T ss_pred             HHCCC---CHHHHHHHHHH
T ss_conf             81498---59999999999