HHsearch alignment for GI: 254780163 and conserved domain: PRK13948

>PRK13948 shikimate kinase; Provisional.
Probab=96.86  E-value=0.024  Score=36.07  Aligned_cols=144  Identities=17%  Similarity=0.278  Sum_probs=68.8

Q ss_pred             CCCCCEEEECCCCCHHHHHHHHHHHHHHCC--CCCHHHHEEEEEEEEHHHHHC--CCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf             677874896676411668999999998548--988345201445540467530--6343123789999999872038983
Q gi|254780163|r  223 RSKNNPLYVGDPGVGKTAIAEGFAKQIVDG--MVPDILLGARIFSLDMGNLIA--GTRYRGDFEERIKKIVKEIESYANA  298 (798)
Q Consensus       223 R~KNn~~lvG~~gvGktaive~la~~i~~~--~vp~~l~~~~i~~ld~~~l~a--g~~~rg~fe~r~~~~~~~~~~~~~~  298 (798)
T Consensus         8 ~~~~~IvLIG~mGsGKStiGk~LA~~l~~~fiD~D~~Ie--~~~g~sI~eIF~~~GE~~---FR~~E~~~l~~l~~~~~~   82 (182)
T PRK13948          8 RPATFVALAGFMGTGKSRIGWELSRALALHFVDTDKLIT--RVVGKSIPEVFAQEGEEY---FRACEKEVVRRVTRLDYA   82 (182)
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEECHHHHH--HHHCCCHHHHHHHHCHHH---HHHHHHHHHHHHHCCCCE
T ss_conf             999818988999998899999999996959888849999--988939999999848999---999999999999747996


Q ss_pred             EEEECCHHHHHCCCCCCCCCC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHH-HHH
Q ss_conf             999736166301554443447-778888766302660388730489999985201114320014430687868999-999
Q gi|254780163|r  299 ILYIDEIHTLVGAGSASGISV-DASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAI-EIV  376 (798)
Q Consensus       299 ilfideih~ligag~~~g~~~-d~an~lkP~L~rg~~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~-~iL  376 (798)
T Consensus        83 V---------I---StGGG~v~~~~n~-~~l~~~g~vv~L~~~~~~i~~R-~~-~~--~R---Pl-l~~~~~~~~l~~l~  141 (182)
T PRK13948         83 V---------I---SLGGGTFIHEENR-RALLGRGPVVVLWASPETVYQR-TK-HS--DR---PL-LQVEDPLERIRTLM  141 (182)
T ss_pred             E---------E---ECCCCEECCHHHH-HHHHHCCEEEEEECCHHHHHHH-CC-CC--CC---CC-CCCCCHHHHHHHHH
T ss_conf             9---------9---7588500589999-9999689899996999999988-17-89--99---98-88998799999999


Q ss_pred             HHHHHHHHHHCCCEEC
Q ss_conf             8612766541035121
Q gi|254780163|r  377 KGIKPYFEEHHQLRYS  392 (798)
Q Consensus       377 ~~~~~~ye~~h~v~~~  392 (798)
T Consensus       142 ~eR~~~Y~~A~~~I~t  157 (182)
T PRK13948        142 EEREPVYRQGTIHVHS  157 (182)
T ss_pred             HHHHHHHHHCCEEEEC
T ss_conf             9999999967889889