HHsearch alignment for GI: 254780163 and conserved domain: PRK13948
>PRK13948 shikimate kinase; Provisional.
Probab=96.86 E-value=0.024 Score=36.07 Aligned_cols=144 Identities=17% Similarity=0.278 Sum_probs=68.8
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHCC--CCCHHHHEEEEEEEEHHHHHC--CCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 677874896676411668999999998548--988345201445540467530--6343123789999999872038983
Q gi|254780163|r 223 RSKNNPLYVGDPGVGKTAIAEGFAKQIVDG--MVPDILLGARIFSLDMGNLIA--GTRYRGDFEERIKKIVKEIESYANA 298 (798)
Q Consensus 223 R~KNn~~lvG~~gvGktaive~la~~i~~~--~vp~~l~~~~i~~ld~~~l~a--g~~~rg~fe~r~~~~~~~~~~~~~~ 298 (798)
T Consensus 8 ~~~~~IvLIG~mGsGKStiGk~LA~~l~~~fiD~D~~Ie--~~~g~sI~eIF~~~GE~~---FR~~E~~~l~~l~~~~~~ 82 (182)
T PRK13948 8 RPATFVALAGFMGTGKSRIGWELSRALALHFVDTDKLIT--RVVGKSIPEVFAQEGEEY---FRACEKEVVRRVTRLDYA 82 (182)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEECHHHHH--HHHCCCHHHHHHHHCHHH---HHHHHHHHHHHHHCCCCE
T ss_conf 999818988999998899999999996959888849999--988939999999848999---999999999999747996
Q ss_pred EEEECCHHHHHCCCCCCCCCC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHH-HHH
Q ss_conf 999736166301554443447-778888766302660388730489999985201114320014430687868999-999
Q gi|254780163|r 299 ILYIDEIHTLVGAGSASGISV-DASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAI-EIV 376 (798)
Q Consensus 299 ilfideih~ligag~~~g~~~-d~an~lkP~L~rg~~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~-~iL 376 (798)
T Consensus 83 V---------I---StGGG~v~~~~n~-~~l~~~g~vv~L~~~~~~i~~R-~~-~~--~R---Pl-l~~~~~~~~l~~l~ 141 (182)
T PRK13948 83 V---------I---SLGGGTFIHEENR-RALLGRGPVVVLWASPETVYQR-TK-HS--DR---PL-LQVEDPLERIRTLM 141 (182)
T ss_pred E---------E---ECCCCEECCHHHH-HHHHHCCEEEEEECCHHHHHHH-CC-CC--CC---CC-CCCCCHHHHHHHHH
T ss_conf 9---------9---7588500589999-9999689899996999999988-17-89--99---98-88998799999999
Q ss_pred HHHHHHHHHHCCCEEC
Q ss_conf 8612766541035121
Q gi|254780163|r 377 KGIKPYFEEHHQLRYS 392 (798)
Q Consensus 377 ~~~~~~ye~~h~v~~~ 392 (798)
T Consensus 142 ~eR~~~Y~~A~~~I~t 157 (182)
T PRK13948 142 EEREPVYRQGTIHVHS 157 (182)
T ss_pred HHHHHHHHHCCEEEEC
T ss_conf 9999999967889889