HHsearch alignment for GI: 254780163 and conserved domain: TIGR00368
>TIGR00368 TIGR00368 Mg chelatase homolog; InterPro: IPR004482 This family of bacterial proteins are variously described as 'hypothetical protein yifB', 'competence protein', 'hypothetical protein' or 'Mg chelatase-related protein'. These proteins are a subset of the magnesium chelatase, ChlI subunit family and either belong to or show significant homology to the non-peptidase homologs of the MEROPS peptidase family S16 (lon protease family, clan SF), IPR001984 from INTERPRO. .
Probab=96.60 E-value=0.00024 Score=50.39 Aligned_cols=120 Identities=24% Similarity=0.450 Sum_probs=71.4
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEE-H
Q ss_conf 544258877548611222178999999998622677874896676411668999999998548988345201445540-4
Q gi|254780163|r 190 YCVDLTEKVKKGKVDILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLD-M 268 (798)
Q Consensus 190 Fg~DLTe~AreGKLDPVIGRd~EI~riiqIL~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld-~ 268 (798)
T Consensus 189 ~~~DL~d---------v~GQ~~-akRAleIAa-AGGHNlll~GPPGsGKTmla~r~~giL-----P-~L~~~EalE~~~v 251 (505)
T TIGR00368 189 IDLDLKD---------VKGQQH-AKRALEIAA-AGGHNLLLLGPPGSGKTMLASRLQGIL-----P-PLTNEEALETARV 251 (505)
T ss_pred HHCCCCC---------CCCHHH-CCHHHHHHH-HCCCCEEEECCCCCCHHHHHHHHHCCC-----C-CCCCHHHHHHHHH
T ss_conf 1044322---------545101-102677753-135643767824962689998751057-----8-6451266667888
Q ss_pred HHHHCCCCCCCHHH-HH-HHH---------HH--------HHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf 67530634312378-99-999---------99--------8720389839997361663015544434477788887663
Q gi|254780163|r 269 GNLIAGTRYRGDFE-ER-IKK---------IV--------KEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPAL 329 (798)
Q Consensus 269 ~~l~ag~~~rg~fe-~r-~~~---------~~--------~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L 329 (798)
T Consensus 252 ~S~~~~l~~~~~~~rQRPFR~PHHsAS~~~lvGGG~~P~PGEiSLAhnGvLFLDEl~EF------~r---~vL~~LR~Pl 322 (505)
T TIGR00368 252 LSLVGKLIDRKQWKRQRPFRSPHHSASKPALVGGGSIPKPGEISLAHNGVLFLDELPEF------KR---KVLDALREPL 322 (505)
T ss_pred HHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHCCCCHHHHCCHHH------HH---HHHHHHCCCC
T ss_conf 88887576523011068677865002566640587522285120200541043222044------67---8998717874
Q ss_pred CCCCEE
Q ss_conf 026603
Q gi|254780163|r 330 SSGAVR 335 (798)
Q Consensus 330 ~rg~~~ 335 (798)
T Consensus 323 Edg~i~ 328 (505)
T TIGR00368 323 EDGSIS 328 (505)
T ss_pred CCCCEE
T ss_conf 267068