HHsearch alignment for GI: 254780163 and conserved domain: TIGR00382
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=98.38 E-value=6.5e-07 Score=68.83 Aligned_cols=74 Identities=34% Similarity=0.561 Sum_probs=59.8
Q ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCH-HHHHHHHHHHHH----CCCCCE
Q ss_conf 778748966764116689999999985489883452014455404675306343123-789999999872----038983
Q gi|254780163|r 224 SKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGD-FEERIKKIVKEI----ESYANA 298 (798)
Q Consensus 224 ~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~-fe~r~~~~~~~~----~~~~~~ 298 (798)
T Consensus 151 ~KSNILLiGPTGSGKTLLAqTLA~~L---~VPfAiADAT-------t-LTEAGYVGEDVENIL~~Llq~ad~DV~kA~kG 219 (452)
T TIGR00382 151 SKSNILLIGPTGSGKTLLAQTLARIL---NVPFAIADAT-------T-LTEAGYVGEDVENILLKLLQAADYDVEKAQKG 219 (452)
T ss_pred HCCCEEEECCCCCCHHHHHHHHHHHC---CCCEEECCHH-------H-HHCCCCCCCCHHHHHHHHHHHCCCCHHHHCCC
T ss_conf 00662454688852689999999873---8874211111-------0-20066424228899999987414552452785
Q ss_pred EEEECCHHHH
Q ss_conf 9997361663
Q gi|254780163|r 299 ILYIDEIHTL 308 (798)
Q Consensus 299 ilfideih~l 308 (798)
T Consensus 220 IiYIDEIDKI 229 (452)
T TIGR00382 220 IIYIDEIDKI 229 (452)
T ss_pred EEEEECCCCH
T ss_conf 0898422310