HHsearch alignment for GI: 254780163 and conserved domain: TIGR00635
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=99.13 E-value=1.5e-09 Score=87.77 Aligned_cols=227 Identities=23% Similarity=0.382 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHHHH---HCCCCC---CEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCC
Q ss_conf 221789999999986---226778---74896676411668999999998548988345201445540467530634312
Q gi|254780163|r 206 LVGRHEEINRTIQIL---CRRSKN---NPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRG 279 (798)
Q Consensus 206 VIGRd~EI~riiqIL---~RR~KN---n~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg 279 (798)
T Consensus 6 FiGQ~~-vk~~L~l~I~AAk~R~e~LDH~LL~GPPGLGKTTLA~IiA~Emg~--------~l~iTs--GP~--------- 65 (305)
T TIGR00635 6 FIGQEK-VKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGV--------NLKITS--GPA--------- 65 (305)
T ss_pred CCCCHH-HHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCC--------CCEEEE--CCC---------
T ss_conf 058288-999999999999824897341663175687467899999998389--------326740--675---------
Q ss_pred HHHHH---HHHHHHHHCCCCCEEEEECCHHHH--------------------HCCCCCCC-CCCCHHHHHHHHHCCCCEE
Q ss_conf 37899---999998720389839997361663--------------------01554443-4477788887663026603
Q gi|254780163|r 280 DFEER---IKKIVKEIESYANAILYIDEIHTL--------------------VGAGSASG-ISVDASNLLKPALSSGAVR 335 (798)
Q Consensus 280 ~fe~r---~~~~~~~~~~~~~~ilfideih~l--------------------igag~~~g-~~~d~an~lkP~L~rg~~~ 335 (798)
T Consensus 66 -L-~kPgDlaaiLt~L~-~gD-VLFIDEIHRL~p~~EE~LYpAMEDF~lDi~IG~Gp~Ar~v~ldLp----------PFT 131 (305)
T TIGR00635 66 -L-EKPGDLAAILTNLE-EGD-VLFIDEIHRLSPAIEELLYPAMEDFRLDIVIGKGPSARSVRLDLP----------PFT 131 (305)
T ss_pred -C-CCHHHHHHHHHHCC-CCC-EEECCHHHHCCHHHHHHCCCCCCCEEEEEEEECCCCCCEEEECCC----------CCC
T ss_conf -5-47578999997056-896-310125650483345310530012178778712898525760686----------944
Q ss_pred EEEECCHHHHHHHHHCCHHHHHHCEEE-EECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 887304899999852011143200144-3068786899999986127665410351211178999998654201555646
Q gi|254780163|r 336 CIGSTTYSEYRQFFEKDKALVRRFQKI-DVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPD 414 (798)
Q Consensus 336 ~IgatT~~ey~~~~e~d~al~rrF~~i-~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPd 414 (798)
T Consensus 132 LvGATTR~G~--l--t~P-LrdRFG~~~rl~fY~~~EL~~Iv~----R~A~~L~~ei~~~~a~~IArrS------RGTPR 196 (305)
T TIGR00635 132 LVGATTRAGM--L--TSP-LRDRFGIILRLEFYTPEELAEIVS----RSAGLLNIEIEQEAALEIARRS------RGTPR 196 (305)
T ss_pred CCCCCCCCCC--C--CCC-HHHHHHHHHHCCCCCHHHHHHHHH----HHHHHCCCCCCHHHHHHHHHHC------CCCHH
T ss_conf 2000034774--1--031-334544745402689878999987----5334414300778999998754------78637
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHCCCCHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHCCHHHHHHHCHHHHHHHHHHH
Q ss_conf 7988998653333211443--22113657899986631024531011100112334210000246653458999999999
Q gi|254780163|r 415 KAIDVIDEAGASQILQPLS--KRRKFITEKDIKKTIASMNRSIHTTSFSRDDDSVLSNLEKNLGTVVYGQEEAIKKLSSS 492 (798)
Q Consensus 415 kAidllDea~a~~~~~~~~--~~~~~~~~~~i~~~~~~~~~gip~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~v~~~ 492 (798)
T Consensus 197 IAnRLLR------RVRDfA~V~~~~~I~~~i~~~AL~~L--~iD~~GLd~~D~~~L~~li~~f~----GGPVGl~tlA~a 264 (305)
T TIGR00635 197 IANRLLR------RVRDFAQVRGQGVITRDIALKALEML--DIDELGLDEIDRKLLSVLIEKFQ----GGPVGLDTLAAA 264 (305)
T ss_pred HHHHHHH------HHHHHHHHHCCCCCCHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHCC----CCCHHHHHHHHH
T ss_conf 8887767------66448887267873889999998862--53330057998999999998628----985238989988
Q ss_pred H
Q ss_conf 8
Q gi|254780163|r 493 I 493 (798)
Q Consensus 493 i 493 (798)
T Consensus 265 ~ 265 (305)
T TIGR00635 265 L 265 (305)
T ss_pred H
T ss_conf 5