HHsearch alignment for GI: 254780163 and conserved domain: TIGR01242

>TIGR01242 26Sp45 26S proteasome subunit P45 family; InterPro: IPR005937 Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome (a 2 MDa complex) is made up of two subcomplexes: the 20S proteasome and the regulatory complex. The former is a 700 kDa cylindrical protease complex consisting of four stacks of heptameric rings with 28 subunits (i.e., 7777) with molecular masses of about 20-35 kDa, whereas the latter is a 700-1000 kDa complex consisting of at least 18 subunits with molecular masses of 28-110 kDa, including 6 putative ATPases (Rpt1-Rpt6) and 12 non-ATPase subunits (Rpn1-12). Members of the 26S proteasome subunit P45 family: ATPase p45/Sug1/Rpt6 may be phosphorylated within the proteasome. This phosphorylation event may play a key role in ATP-dependent proteolysis because a good correlation exists between the inhibition pattern of protein kinase inhibitors against the phosphorylation of p45 and that against the ATP-dependent proteolytic activity , . More information about these protein can be found at Protein of the Month: AAA ATPases .; GO: 0016787 hydrolase activity, 0030163 protein catabolic process, 0005634 nucleus, 0005737 cytoplasm.
Probab=99.02  E-value=2.5e-09  Score=86.22  Aligned_cols=210  Identities=27%  Similarity=0.408  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHHHHCCCCC-------------CEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCC
Q ss_conf             1789999999986226778-------------748966764116689999999985489883452014455404675306
Q gi|254780163|r  208 GRHEEINRTIQILCRRSKN-------------NPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAG  274 (798)
Q Consensus       208 GRd~EI~riiqIL~RR~KN-------------n~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag  274 (798)
T Consensus       126 GL~~Q~~E~~E~v~LPlk~PeLF~~vGI~PPKGvLLyGPPGtGKTLlAKAvA~et----------~ATFIrvVgSElV--  193 (364)
T TIGR01242       126 GLEKQIREIREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET----------NATFIRVVGSELV--  193 (364)
T ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCC----------CCEEEEEEHHHHH--
T ss_conf             8789999998887346888316776288989865700757976889999863145----------5126886044444--


Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCC-CCCCCC--HH----HH---HHHHHCCCCEEEEEECCHHH
Q ss_conf             3431237899999998720389839997361663015544-434477--78----88---87663026603887304899
Q gi|254780163|r  275 TRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSA-SGISVD--AS----NL---LKPALSSGAVRCIGSTTYSE  344 (798)
Q Consensus       275 ~~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~-~g~~~d--~a----n~---lkP~L~rg~~~~IgatT~~e  344 (798)
T Consensus       194 ~KyIGEGArLV~~~F~LAkEKaPsIiFIDEiDAi-aakR~~~~TsGdREV~RTlmQLLAElDGFd~rg~VkviaATNR~D  272 (364)
T TIGR01242       194 RKYIGEGARLVREVFELAKEKAPSIIFIDEIDAI-AAKRVDSSTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPD  272 (364)
T ss_pred             HHHHCCHHHHHHHHHHHHHCCCCCEEEEECHHHH-HHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCH
T ss_conf             4441331689999999853069816861013335-432114677873157889999997524888767616887207620


Q ss_pred             HHHHHHCCHHHHH--HCEE-EEECCCCHHHHHHHHHHHHHHHHHHCCCEECC-HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf             9998520111432--0014-43068786899999986127665410351211-178999998654201555646798899
Q gi|254780163|r  345 YRQFFEKDKALVR--RFQK-IDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSK-EAIRAAVQLSVRHFTSRKLPDKAIDVI  420 (798)
Q Consensus       345 y~~~~e~d~al~r--rF~~-i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~-~al~~av~ls~ryi~~r~lPdkAidll  420 (798)
T Consensus       273 -----ilDPA~LRPGRFDR~IEVPlP~~~GR~eIlkiHTr------~~~la~dVdl~~~A~~TeG~-sGAdl--KAi~t-  337 (364)
T TIGR01242       273 -----ILDPAILRPGRFDRIIEVPLPDFEGRLEILKIHTR------KMKLAEDVDLEAIAKLTEGA-SGADL--KAICT-  337 (364)
T ss_pred             -----HCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHC------CCCCCCCCCHHHHHHHHCCC-CCCHH--HHHHH-
T ss_conf             -----20432148886132573169783220566555210------00012356879999874788-66304--23434-


Q ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             865333321144322113657899986631
Q gi|254780163|r  421 DEAGASQILQPLSKRRKFITEKDIKKTIAS  450 (798)
Q Consensus       421 Dea~a~~~~~~~~~~~~~~~~~~i~~~~~~  450 (798)
T Consensus       338 -EA----G~~AIR~~r~~vT~~Df~kAv~K  362 (364)
T TIGR01242       338 -EA----GMFAIREERDYVTMDDFLKAVEK  362 (364)
T ss_pred             -HH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             -62----04777744567669999999873