HHsearch alignment for GI: 254780163 and conserved domain: TIGR01842
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=96.94 E-value=0.0008 Score=46.62 Aligned_cols=37 Identities=24% Similarity=0.486 Sum_probs=27.0
Q ss_pred CEEE-EECCCCHHHHHHHHHHH--HHCCCCEEEEEHHHHH
Q ss_conf 0688-61432003889999987--3047733772068861
Q gi|254780163|r 508 GCYV-FSGPTGVGKTEISKQLA--FALGVQLLRFDMSEYM 544 (798)
Q Consensus 508 g~fl-f~GptGvGKTelak~la--~~~~~~lir~dmsey~ 544 (798)
T Consensus 356 Ge~laIIGPSgSGKStLaR~~vG~W~~~~G~VRLDGadl~ 395 (556)
T TIGR01842 356 GEALAIIGPSGSGKSTLARILVGIWPPASGSVRLDGADLK 395 (556)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEHHHHH
T ss_conf 7458887478652588987887210135653364033440