HHsearch alignment for GI: 254780163 and conserved domain: TIGR02538

>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB; InterPro: IPR013374 This model describes a protein involved in type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly, and is closely related to GspE (IPR013369 from INTERPRO) of type II secretion systems (also referred to as the main terminal branch of the general secretion pathway). Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0009297 pilus biogenesis.
Probab=95.58  E-value=0.0052  Score=40.81  Aligned_cols=65  Identities=26%  Similarity=0.510  Sum_probs=38.5

Q ss_pred             CCCCCEEEEECCCCHHHHH-HHHHHHH-------HC--CCCEE-------EEEHHHHHCCCCCCHHCCCCCHHCCCCCCC
Q ss_conf             7874068861432003889-9999873-------04--77337-------720688612465301104780002564443
Q gi|254780163|r  504 NKPIGCYVFSGPTGVGKTE-ISKQLAF-------AL--GVQLL-------RFDMSEYMERHAVSRLIGAPPGYVGFGQGG  566 (798)
Q Consensus       504 ~rP~g~flf~GptGvGKTe-lak~la~-------~~--~~~li-------r~dmsey~e~~~vs~LiGappGYvG~~egg  566 (798)
T Consensus       323 ~kPqGMvLVTGPTGSGKTVSLYTaLniLN~~~~NISTAEDPVEINLpGINQVnvNp---K-------------~GLTFAa  386 (577)
T TIGR02538       323 HKPQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINLPGINQVNVNP---K-------------IGLTFAA  386 (577)
T ss_pred             HCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCEECCCC---C-------------CCCCHHH
T ss_conf             07997288626659841687876311257767450114477246407715120466---7-------------8878799


Q ss_pred             CCCHHHHHCCCEEEEECCH
Q ss_conf             1003555158517774044
Q gi|254780163|r  567 ILADSVDQNPYSVVLLDEI  585 (798)
Q Consensus       567 ~Lte~vr~~P~sVvl~DEi  585 (798)
T Consensus       387 ALrSFLRQDP-DIIMVGEI  404 (577)
T TIGR02538       387 ALRSFLRQDP-DIIMVGEI  404 (577)
T ss_pred             HHHHHCCCCC-CEEEEECC
T ss_conf             9986406899-88987066