HHsearch alignment for GI: 254780163 and conserved domain: TIGR02538
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB; InterPro: IPR013374 This model describes a protein involved in type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly, and is closely related to GspE (IPR013369 from INTERPRO) of type II secretion systems (also referred to as the main terminal branch of the general secretion pathway). Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0009297 pilus biogenesis.
Probab=95.58 E-value=0.0052 Score=40.81 Aligned_cols=65 Identities=26% Similarity=0.510 Sum_probs=38.5
Q ss_pred CCCCCEEEEECCCCHHHHH-HHHHHHH-------HC--CCCEE-------EEEHHHHHCCCCCCHHCCCCCHHCCCCCCC
Q ss_conf 7874068861432003889-9999873-------04--77337-------720688612465301104780002564443
Q gi|254780163|r 504 NKPIGCYVFSGPTGVGKTE-ISKQLAF-------AL--GVQLL-------RFDMSEYMERHAVSRLIGAPPGYVGFGQGG 566 (798)
Q Consensus 504 ~rP~g~flf~GptGvGKTe-lak~la~-------~~--~~~li-------r~dmsey~e~~~vs~LiGappGYvG~~egg 566 (798)
T Consensus 323 ~kPqGMvLVTGPTGSGKTVSLYTaLniLN~~~~NISTAEDPVEINLpGINQVnvNp---K-------------~GLTFAa 386 (577)
T TIGR02538 323 HKPQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINLPGINQVNVNP---K-------------IGLTFAA 386 (577)
T ss_pred HCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCEECCCC---C-------------CCCCHHH
T ss_conf 07997288626659841687876311257767450114477246407715120466---7-------------8878799
Q ss_pred CCCHHHHHCCCEEEEECCH
Q ss_conf 1003555158517774044
Q gi|254780163|r 567 ILADSVDQNPYSVVLLDEI 585 (798)
Q Consensus 567 ~Lte~vr~~P~sVvl~DEi 585 (798)
T Consensus 387 ALrSFLRQDP-DIIMVGEI 404 (577)
T TIGR02538 387 ALRSFLRQDP-DIIMVGEI 404 (577)
T ss_pred HHHHHCCCCC-CEEEEECC
T ss_conf 9986406899-88987066