HHsearch alignment for GI: 254780163 and conserved domain: TIGR02782
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=95.91 E-value=0.048 Score=33.86 Aligned_cols=115 Identities=26% Similarity=0.400 Sum_probs=79.7
Q ss_pred CHHHHHHH--HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEE
Q ss_conf 03565442--5887754861122217899999999862267787489667641166899999999854898834520144
Q gi|254780163|r 186 ALSAYCVD--LTEKVKKGKVDILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARI 263 (798)
Q Consensus 186 ~LdkFg~D--LTe~AreGKLDPVIGRd~EI~riiqIL~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i 263 (798)
T Consensus 114 TLDdYV~~gimtaaQ~d~-----------l~~--Av~ar~---NIlv~GGTGSGKTTLaNAlla~I~~l~~P----~dR~ 173 (315)
T TIGR02782 114 TLDDYVEAGIMTAAQRDV-----------LRE--AVAARK---NILVVGGTGSGKTTLANALLAEIAKLNDP----DDRV 173 (315)
T ss_pred CCHHHHHHCCCCHHHHHH-----------HHH--HHHHCC---CEEEECCCCCCHHHHHHHHHHHHHHCCCC----CCEE
T ss_conf 707776404455789999-----------999--997129---88998145885799999999988521699----9618
Q ss_pred EEE-EHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCC-CCCHHHHHHHHHCCCCEEEEEECC
Q ss_conf 554-046753063431237899999998720389839997361663015544434-477788887663026603887304
Q gi|254780163|r 264 FSL-DMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGI-SVDASNLLKPALSSGAVRCIGSTT 341 (798)
Q Consensus 264 ~~l-d~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~-~~d~an~lkP~L~rg~~~~IgatT 341 (798)
T Consensus 174 vIiEDT~ElQC--------------------~A~N~V~l-----------rT~d~~Gi~M~~LLk~TL------------ 210 (315)
T TIGR02782 174 VIIEDTAELQC--------------------AAENLVAL-----------RTSDDVGISMTRLLKATL------------ 210 (315)
T ss_pred EEEECCHHHHH--------------------CCCCEEEE-----------ECCCCCCCCHHHHHHHHH------------
T ss_conf 99854713201--------------------37870687-----------448986614788888750------------
Q ss_pred HHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHH
Q ss_conf 899999852011143200144306878689999998
Q gi|254780163|r 342 YSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVK 377 (798)
Q Consensus 342 ~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~ 377 (798)
T Consensus 211 --Rl----RPD--------RI~VGEVRg~eAL~LLK 232 (315)
T TIGR02782 211 --RL----RPD--------RIIVGEVRGGEALDLLK 232 (315)
T ss_pred --CC----CCC--------CEEEEEECCHHHHHHHH
T ss_conf --05----887--------33563014389999986