HHsearch alignment for GI: 254780163 and conserved domain: TIGR02902

>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=99.11  E-value=1.7e-09  Score=87.41  Aligned_cols=226  Identities=27%  Similarity=0.371  Sum_probs=158.4

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCC-CCHHHHEEEEEEEEHH
Q ss_conf             442588775486112221789999999986226778748966764116689999999985489-8834520144554046
Q gi|254780163|r  191 CVDLTEKVKKGKVDILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGM-VPDILLGARIFSLDMG  269 (798)
Q Consensus       191 g~DLTe~AreGKLDPVIGRd~EI~riiqIL~RR~KNn~~lvG~~gvGktaive~la~~i~~~~-vp~~l~~~~i~~ld~~  269 (798)
T Consensus        52 t~PL~Ek~RP~SF~EIiGQe~GI~ALKAALCGPNPQHVIiYGPPGVGKTAAA-RLVLeeAKk~~~SPFke~A~FVEiDAT  130 (532)
T TIGR02902        52 TEPLSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAA-RLVLEEAKKNPASPFKEEAAFVEIDAT  130 (532)
T ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHH-HHHHHHHHCCCCCCCCCCCEEEEEECC
T ss_conf             7887746677763325673556899998606868963898788696178999-999998650875378988668985051


Q ss_pred             HHHCCCCCCCHHHHH------HHHHHHHH---------------------CCCCCEEEEECCH---HHH-----------
Q ss_conf             753063431237899------99999872---------------------0389839997361---663-----------
Q gi|254780163|r  270 NLIAGTRYRGDFEER------IKKIVKEI---------------------ESYANAILYIDEI---HTL-----------  308 (798)
Q Consensus       270 ~l~ag~~~rg~fe~r------~~~~~~~~---------------------~~~~~~ilfidei---h~l-----------  308 (798)
T Consensus       131 T~--------RFDERGIADPLIGSVHDPIYQGAGplG~AGIPQPK~GAVT~AHGG-vLFIDEIGELHP~~MNKLLKVLED  201 (532)
T TIGR02902       131 TA--------RFDERGIADPLIGSVHDPIYQGAGPLGVAGIPQPKPGAVTKAHGG-VLFIDEIGELHPVQMNKLLKVLED  201 (532)
T ss_pred             CC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-EEEECCCCCCCHHHHHHHHHHHHC
T ss_conf             03--------602146666567761585333765457885575877763202586-551212466582435314113302


Q ss_pred             ----HC-CC-CCCCCCCCHHHHHHHHHCCC---CEEEEEECC--HHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHH
Q ss_conf             ----01-55-44434477788887663026---603887304--899999852011143200144306878689999998
Q gi|254780163|r  309 ----VG-AG-SASGISVDASNLLKPALSSG---AVRCIGSTT--YSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVK  377 (798)
Q Consensus       309 ----ig-ag-~~~g~~~d~an~lkP~L~rg---~~~~IgatT--~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~  377 (798)
T Consensus       202 RKVFLdSAYY~s~--~pniP~hI~dIFqnGlPADFRLiGATTR~Pe------EIpPAlRSRC~EIFFR~L~~EEi~~iAk  273 (532)
T TIGR02902       202 RKVFLDSAYYSSE--DPNIPSHIRDIFQNGLPADFRLIGATTRNPE------EIPPALRSRCVEIFFRPLLKEEIKEIAK  273 (532)
T ss_pred             CCCHHHCCCCCCC--CCCCCHHHHHHHCCCCCCCEECCCCCCCCCC------CCCHHHHCCCEEEEECCCCHHHHHHHHH
T ss_conf             2200001235877--7865427899720678734012133369877------6783465052267716888789999987


Q ss_pred             HHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             612766541035121117899999865420155564679889986533332114432211365789998663
Q gi|254780163|r  378 GIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVIDEAGASQILQPLSKRRKFITEKDIKKTIA  449 (798)
Q Consensus       378 ~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdkAidllDea~a~~~~~~~~~~~~~~~~~~i~~~~~  449 (798)
T Consensus       274 ~AaeKI----g~~l~~~Al~~I~~Ya~---nGR----EAvN~~QLAaG~a----~~E~Rk~I~~~DieWV~~  330 (532)
T TIGR02902       274 NAAEKI----GLNLEKEALDLIAKYAS---NGR----EAVNLVQLAAGIA----LGENRKRILAEDIEWVIE  330 (532)
T ss_pred             HHHHHC----CCCCCHHHHHHHHHHHC---CCC----HHHHHHHHHHHHE----ECCCCCEECHHHHHHHHH
T ss_conf             656530----46547547999998740---540----6778999973140----128876120546445553