HHsearch alignment for GI: 254780163 and conserved domain: TIGR02902
>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=99.11 E-value=1.7e-09 Score=87.41 Aligned_cols=226 Identities=27% Similarity=0.371 Sum_probs=158.4
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCC-CCHHHHEEEEEEEEHH
Q ss_conf 442588775486112221789999999986226778748966764116689999999985489-8834520144554046
Q gi|254780163|r 191 CVDLTEKVKKGKVDILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGM-VPDILLGARIFSLDMG 269 (798)
Q Consensus 191 g~DLTe~AreGKLDPVIGRd~EI~riiqIL~RR~KNn~~lvG~~gvGktaive~la~~i~~~~-vp~~l~~~~i~~ld~~ 269 (798)
T Consensus 52 t~PL~Ek~RP~SF~EIiGQe~GI~ALKAALCGPNPQHVIiYGPPGVGKTAAA-RLVLeeAKk~~~SPFke~A~FVEiDAT 130 (532)
T TIGR02902 52 TEPLSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAA-RLVLEEAKKNPASPFKEEAAFVEIDAT 130 (532)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHH-HHHHHHHHCCCCCCCCCCCEEEEEECC
T ss_conf 7887746677763325673556899998606868963898788696178999-999998650875378988668985051
Q ss_pred HHHCCCCCCCHHHHH------HHHHHHHH---------------------CCCCCEEEEECCH---HHH-----------
Q ss_conf 753063431237899------99999872---------------------0389839997361---663-----------
Q gi|254780163|r 270 NLIAGTRYRGDFEER------IKKIVKEI---------------------ESYANAILYIDEI---HTL----------- 308 (798)
Q Consensus 270 ~l~ag~~~rg~fe~r------~~~~~~~~---------------------~~~~~~ilfidei---h~l----------- 308 (798)
T Consensus 131 T~--------RFDERGIADPLIGSVHDPIYQGAGplG~AGIPQPK~GAVT~AHGG-vLFIDEIGELHP~~MNKLLKVLED 201 (532)
T TIGR02902 131 TA--------RFDERGIADPLIGSVHDPIYQGAGPLGVAGIPQPKPGAVTKAHGG-VLFIDEIGELHPVQMNKLLKVLED 201 (532)
T ss_pred CC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-EEEECCCCCCCHHHHHHHHHHHHC
T ss_conf 03--------602146666567761585333765457885575877763202586-551212466582435314113302
Q ss_pred ----HC-CC-CCCCCCCCHHHHHHHHHCCC---CEEEEEECC--HHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHH
Q ss_conf ----01-55-44434477788887663026---603887304--899999852011143200144306878689999998
Q gi|254780163|r 309 ----VG-AG-SASGISVDASNLLKPALSSG---AVRCIGSTT--YSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVK 377 (798)
Q Consensus 309 ----ig-ag-~~~g~~~d~an~lkP~L~rg---~~~~IgatT--~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~ 377 (798)
T Consensus 202 RKVFLdSAYY~s~--~pniP~hI~dIFqnGlPADFRLiGATTR~Pe------EIpPAlRSRC~EIFFR~L~~EEi~~iAk 273 (532)
T TIGR02902 202 RKVFLDSAYYSSE--DPNIPSHIRDIFQNGLPADFRLIGATTRNPE------EIPPALRSRCVEIFFRPLLKEEIKEIAK 273 (532)
T ss_pred CCCHHHCCCCCCC--CCCCCHHHHHHHCCCCCCCEECCCCCCCCCC------CCCHHHHCCCEEEEECCCCHHHHHHHHH
T ss_conf 2200001235877--7865427899720678734012133369877------6783465052267716888789999987
Q ss_pred HHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 612766541035121117899999865420155564679889986533332114432211365789998663
Q gi|254780163|r 378 GIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVIDEAGASQILQPLSKRRKFITEKDIKKTIA 449 (798)
Q Consensus 378 ~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdkAidllDea~a~~~~~~~~~~~~~~~~~~i~~~~~ 449 (798)
T Consensus 274 ~AaeKI----g~~l~~~Al~~I~~Ya~---nGR----EAvN~~QLAaG~a----~~E~Rk~I~~~DieWV~~ 330 (532)
T TIGR02902 274 NAAEKI----GLNLEKEALDLIAKYAS---NGR----EAVNLVQLAAGIA----LGENRKRILAEDIEWVIE 330 (532)
T ss_pred HHHHHC----CCCCCHHHHHHHHHHHC---CCC----HHHHHHHHHHHHE----ECCCCCEECHHHHHHHHH
T ss_conf 656530----46547547999998740---540----6778999973140----128876120546445553