HHsearch alignment for GI: 254780163 and conserved domain: TIGR02903
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252 This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC..
Probab=99.46 E-value=3.9e-12 Score=106.39 Aligned_cols=258 Identities=25% Similarity=0.397 Sum_probs=157.7
Q ss_pred CCHHHHHHH-HHHHHHHHHHHCCCEECCHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 786899999-98612766541035121117899999-8654201555646798899865333321144322113657899
Q gi|254780163|r 367 PSIEDAIEI-VKGIKPYFEEHHQLRYSKEAIRAAVQ-LSVRHFTSRKLPDKAIDVIDEAGASQILQPLSKRRKFITEKDI 444 (798)
Q Consensus 367 p~~~~~~~i-L~~~~~~ye~~h~v~~~~~al~~av~-ls~ryi~~r~lPdkAidllDea~a~~~~~~~~~~~~~~~~~~i 444 (798)
T Consensus 61 P~~~e~~~ial~~~~~----------------~iad~~A~R~v~~~------iE--------~~ve~~l~erq~~Yl~Ei 110 (616)
T TIGR02903 61 PDAKELAEIALEDTED----------------HIADILARRTVENE------IE--------RKVEKKLQERQNKYLEEI 110 (616)
T ss_pred CCCCCHHHHHHHHHHH----------------HHHHHHHHHHHHHH------HH--------HHHHHHHHHHHHHHHHHH
T ss_conf 7864126889998899----------------99998864335678------89--------999999887666899999
Q ss_pred HHHHHHCCCCCCHHHHHCCHHHHHHHHCC-------------HHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEE
Q ss_conf 98663102453101110011233421000-------------02466534589999999998775204456578740688
Q gi|254780163|r 445 KKTIASMNRSIHTTSFSRDDDSVLSNLEK-------------NLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYV 511 (798)
Q Consensus 445 ~~~~~~~~~gip~~~~~~~~~~~l~~l~~-------------~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~fl 511 (798)
T Consensus 111 r~~vlk~~-~g~En~sTLKkl~~Le~Lek~kl~~s~~slLRP~~f~EiVGQerAI~aLlaK~-------aSP-fPQHi-i 180 (616)
T TIGR02903 111 RLQVLKEE-KGPENSSTLKKLERLEKLEKKKLAKSIQSLLRPRAFSEIVGQERAIKALLAKL-------ASP-FPQHI-I 180 (616)
T ss_pred HHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH-------CCC-CCCCE-E
T ss_conf 88775205-78861678899998752447889999998628766764333468999999763-------188-86607-8
Q ss_pred EECCCCHHHHHHHHHHH----------HHCCCCE-------EEEEHHHHHCCCCCCHHCCC--CCHHCCCCC--------
Q ss_conf 61432003889999987----------3047733-------77206886124653011047--800025644--------
Q gi|254780163|r 512 FSGPTGVGKTEISKQLA----------FALGVQL-------LRFDMSEYMERHAVSRLIGA--PPGYVGFGQ-------- 564 (798)
Q Consensus 512 f~GptGvGKTelak~la----------~~~~~~l-------ir~dmsey~e~~~vs~LiGa--ppGYvG~~e-------- 564 (798)
T Consensus 181 LYGPPGVGKTTaARl~LEe~K~~~~tPF~~DA~FvEVDGtTLRWDPREvTNP-----LLGSVHDPIYQGa~RDLAE~GvP 255 (616)
T TIGR02903 181 LYGPPGVGKTTAARLALEEAKKLKNTPFAEDAPFVEVDGTTLRWDPREVTNP-----LLGSVHDPIYQGARRDLAETGVP 255 (616)
T ss_pred EECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCHHHCCCCCC
T ss_conf 5573388478999998762136874476113785751576266774101477-----67762576556764011047879
Q ss_pred ---CCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCC
Q ss_conf ---43100355515851777404455028999999998777502177997761254299994242145533036898821
Q gi|254780163|r 565 ---GGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSS 641 (798)
Q Consensus 565 ---gg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~ 641 (798)
T Consensus 256 EPk~GLVT~AHG----GvLFIDEIGELD~lLQnKLLKVLED--------KrV~F~SsY--------------------YD 303 (616)
T TIGR02903 256 EPKLGLVTDAHG----GVLFIDEIGELDPLLQNKLLKVLED--------KRVEFSSSY--------------------YD 303 (616)
T ss_pred CCCCCCCCCCCC----CEEEEECHHHHHHHHHHHHHHHHCC--------CEEEEEECC--------------------CC
T ss_conf 898987100477----5676502112227876324443226--------436653212--------------------48
Q ss_pred CCHHHHHHHHHHHCC---------------------HHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 114889999987288---------------------78817768289628899999999999999999999986698899
Q gi|254780163|r 642 RNDDADKEALRNFLS---------------------PEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFH 700 (798)
Q Consensus 642 ~~~~~~~~~l~~~f~---------------------peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~ 700 (798)
T Consensus 304 pdD~NvPkYIK~lFe~GAPADFvLIGATTr~P~eINpALRSRCaEv-fFePL~p~dI~~Iv~~AA~klnv---------~ 373 (616)
T TIGR02903 304 PDDENVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEV-FFEPLTPEDIKEIVLNAAEKLNV---------K 373 (616)
T ss_pred CCCCCCCHHHHHHHCCCCCCCEEEECCCCCCHHHCCHHHHCCCCEE-ECCCCCHHHHHHHHHHHHHHCCC---------C
T ss_conf 7537865588885226888256872661588244051233014313-21798878999999998886177---------0
Q ss_pred ECHHHHHHHHH
Q ss_conf 98899999997
Q gi|254780163|r 701 FSEEVINWLVS 711 (798)
Q Consensus 701 ~~~~~~~~l~~ 711 (798)
T Consensus 374 L~~gV~e~Ia~ 384 (616)
T TIGR02903 374 LAEGVEELIAR 384 (616)
T ss_pred CCCCHHHHHHH
T ss_conf 00364878721