HHsearch alignment for GI: 254780163 and conserved domain: TIGR02903

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252 This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC..
Probab=99.46  E-value=3.9e-12  Score=106.39  Aligned_cols=258  Identities=25%  Similarity=0.397  Sum_probs=157.7

Q ss_pred             CCHHHHHHH-HHHHHHHHHHHCCCEECCHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf             786899999-98612766541035121117899999-8654201555646798899865333321144322113657899
Q gi|254780163|r  367 PSIEDAIEI-VKGIKPYFEEHHQLRYSKEAIRAAVQ-LSVRHFTSRKLPDKAIDVIDEAGASQILQPLSKRRKFITEKDI  444 (798)
Q Consensus       367 p~~~~~~~i-L~~~~~~ye~~h~v~~~~~al~~av~-ls~ryi~~r~lPdkAidllDea~a~~~~~~~~~~~~~~~~~~i  444 (798)
T Consensus        61 P~~~e~~~ial~~~~~----------------~iad~~A~R~v~~~------iE--------~~ve~~l~erq~~Yl~Ei  110 (616)
T TIGR02903        61 PDAKELAEIALEDTED----------------HIADILARRTVENE------IE--------RKVEKKLQERQNKYLEEI  110 (616)
T ss_pred             CCCCCHHHHHHHHHHH----------------HHHHHHHHHHHHHH------HH--------HHHHHHHHHHHHHHHHHH
T ss_conf             7864126889998899----------------99998864335678------89--------999999887666899999


Q ss_pred             HHHHHHCCCCCCHHHHHCCHHHHHHHHCC-------------HHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEE
Q ss_conf             98663102453101110011233421000-------------02466534589999999998775204456578740688
Q gi|254780163|r  445 KKTIASMNRSIHTTSFSRDDDSVLSNLEK-------------NLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYV  511 (798)
Q Consensus       445 ~~~~~~~~~gip~~~~~~~~~~~l~~l~~-------------~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~fl  511 (798)
T Consensus       111 r~~vlk~~-~g~En~sTLKkl~~Le~Lek~kl~~s~~slLRP~~f~EiVGQerAI~aLlaK~-------aSP-fPQHi-i  180 (616)
T TIGR02903       111 RLQVLKEE-KGPENSSTLKKLERLEKLEKKKLAKSIQSLLRPRAFSEIVGQERAIKALLAKL-------ASP-FPQHI-I  180 (616)
T ss_pred             HHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH-------CCC-CCCCE-E
T ss_conf             88775205-78861678899998752447889999998628766764333468999999763-------188-86607-8


Q ss_pred             EECCCCHHHHHHHHHHH----------HHCCCCE-------EEEEHHHHHCCCCCCHHCCC--CCHHCCCCC--------
Q ss_conf             61432003889999987----------3047733-------77206886124653011047--800025644--------
Q gi|254780163|r  512 FSGPTGVGKTEISKQLA----------FALGVQL-------LRFDMSEYMERHAVSRLIGA--PPGYVGFGQ--------  564 (798)
Q Consensus       512 f~GptGvGKTelak~la----------~~~~~~l-------ir~dmsey~e~~~vs~LiGa--ppGYvG~~e--------  564 (798)
T Consensus       181 LYGPPGVGKTTaARl~LEe~K~~~~tPF~~DA~FvEVDGtTLRWDPREvTNP-----LLGSVHDPIYQGa~RDLAE~GvP  255 (616)
T TIGR02903       181 LYGPPGVGKTTAARLALEEAKKLKNTPFAEDAPFVEVDGTTLRWDPREVTNP-----LLGSVHDPIYQGARRDLAETGVP  255 (616)
T ss_pred             EECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCHHHCCCCCC
T ss_conf             5573388478999998762136874476113785751576266774101477-----67762576556764011047879


Q ss_pred             ---CCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCC
Q ss_conf             ---43100355515851777404455028999999998777502177997761254299994242145533036898821
Q gi|254780163|r  565 ---GGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSS  641 (798)
Q Consensus       565 ---gg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~  641 (798)
T Consensus       256 EPk~GLVT~AHG----GvLFIDEIGELD~lLQnKLLKVLED--------KrV~F~SsY--------------------YD  303 (616)
T TIGR02903       256 EPKLGLVTDAHG----GVLFIDEIGELDPLLQNKLLKVLED--------KRVEFSSSY--------------------YD  303 (616)
T ss_pred             CCCCCCCCCCCC----CEEEEECHHHHHHHHHHHHHHHHCC--------CEEEEEECC--------------------CC
T ss_conf             898987100477----5676502112227876324443226--------436653212--------------------48


Q ss_pred             CCHHHHHHHHHHHCC---------------------HHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             114889999987288---------------------78817768289628899999999999999999999986698899
Q gi|254780163|r  642 RNDDADKEALRNFLS---------------------PEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFH  700 (798)
Q Consensus       642 ~~~~~~~~~l~~~f~---------------------peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~  700 (798)
T Consensus       304 pdD~NvPkYIK~lFe~GAPADFvLIGATTr~P~eINpALRSRCaEv-fFePL~p~dI~~Iv~~AA~klnv---------~  373 (616)
T TIGR02903       304 PDDENVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEV-FFEPLTPEDIKEIVLNAAEKLNV---------K  373 (616)
T ss_pred             CCCCCCCHHHHHHHCCCCCCCEEEECCCCCCHHHCCHHHHCCCCEE-ECCCCCHHHHHHHHHHHHHHCCC---------C
T ss_conf             7537865588885226888256872661588244051233014313-21798878999999998886177---------0


Q ss_pred             ECHHHHHHHHH
Q ss_conf             98899999997
Q gi|254780163|r  701 FSEEVINWLVS  711 (798)
Q Consensus       701 ~~~~~~~~l~~  711 (798)
T Consensus       374 L~~gV~e~Ia~  384 (616)
T TIGR02903       374 LAEGVEELIAR  384 (616)
T ss_pred             CCCCHHHHHHH
T ss_conf             00364878721