HHsearch alignment for GI: 254780163 and conserved domain: TIGR02974
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF; InterPro: IPR014317 Members of this protein are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, found in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol and filamentous phage infection..
Probab=98.52 E-value=2.1e-06 Score=65.20 Aligned_cols=219 Identities=21% Similarity=0.346 Sum_probs=167.1
Q ss_pred HHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC---CCCEEEEEHHHHHCCCCCCHHCCC
Q ss_conf 53458999999999877520445657874068861432003889999987304---773377206886124653011047
Q gi|254780163|r 479 VYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL---GVQLLRFDMSEYMERHAVSRLIGA 555 (798)
Q Consensus 479 v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~---~~~lir~dmsey~e~~~vs~LiGa 555 (798)
T Consensus 1 liG~S~aFL~vLeqvS~----lA~l~rPV---LiiGERGTGKELiA~RLHyLS~RW~~Plv~LNCAALse~LldSELFGH 73 (349)
T TIGR02974 1 LIGESNAFLEVLEQVSR----LAPLDRPV---LIIGERGTGKELIAARLHYLSKRWQQPLVKLNCAALSENLLDSELFGH 73 (349)
T ss_pred CCCCCHHHHHHHHHHHH----CCCCCCCE---EEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHH
T ss_conf 98872789999998751----04678866---886146746899998853324655488626610127825555665310
Q ss_pred CCHHCCCCCCCCCCHHHHHCCC-------EEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCH
Q ss_conf 8000256444310035551585-------177740445502899999999877750217799776125429999424214
Q gi|254780163|r 556 PPGYVGFGQGGILADSVDQNPY-------SVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGA 628 (798)
Q Consensus 556 ppGYvG~~egg~Lte~vr~~P~-------sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~ 628 (798)
T Consensus 74 --------EaGAFTGA~~rh~GRFERAdGGTLFLDElAtas~~VQEKLLRViEYG~fERVGG~~~l~vDVRlvaATN~DL 145 (349)
T TIGR02974 74 --------EAGAFTGAKKRHEGRFERADGGTLFLDELATASLAVQEKLLRVIEYGEFERVGGSQTLKVDVRLVAATNADL 145 (349)
T ss_pred --------CCCCHHHHCCCCCCCCEECCCCCCHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCEEEECCEEEECCCCCH
T ss_conf --------010013030468898544368873888871421676786612010130330178604773513676214136
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCC-EEEECCCC--CHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHH
Q ss_conf 553303689882111488999998728878817768-28962889--999999999999999999998669889998899
Q gi|254780163|r 629 LEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLD-SIIPFFPL--SSDIIRQVVHKFIMKLELQLQEKGISFHFSEEV 705 (798)
Q Consensus 629 ~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid-~ii~F~~l--~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~ 705 (798)
T Consensus 146 P~------------------lA~~G~FRaDLLDRLAFDVi~LPPLR~R~~DI~lLAe~FA~~Ma~EL~-~~~F~GFt~~A 206 (349)
T TIGR02974 146 PA------------------LAAEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELG-LPLFPGFTPQA 206 (349)
T ss_pred HH------------------HHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCCHHHHHHH
T ss_conf 98------------------986589840145544565507978888723278999999999999707-86551143899
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9999971898101532679999986235
Q gi|254780163|r 706 INWLVSHGYDVKMGARPLERIIKEHVKV 733 (798)
Q Consensus 706 ~~~l~~~~~~~~~GAR~l~r~i~~~i~~ 733 (798)
T Consensus 207 ~~~L~~Y~WPG--NvRELkNvvERsVyR 232 (349)
T TIGR02974 207 REQLLEYHWPG--NVRELKNVVERSVYR 232 (349)
T ss_pred HHHHHCCCCCC--CCHHHHHHHHHHHHH
T ss_conf 99997068888--521244467666530