HHsearch alignment for GI: 254780163 and conserved domain: TIGR02974

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF; InterPro: IPR014317 Members of this protein are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, found in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol and filamentous phage infection..
Probab=98.52  E-value=2.1e-06  Score=65.20  Aligned_cols=219  Identities=21%  Similarity=0.346  Sum_probs=167.1

Q ss_pred             HHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC---CCCEEEEEHHHHHCCCCCCHHCCC
Q ss_conf             53458999999999877520445657874068861432003889999987304---773377206886124653011047
Q gi|254780163|r  479 VYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL---GVQLLRFDMSEYMERHAVSRLIGA  555 (798)
Q Consensus       479 v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~---~~~lir~dmsey~e~~~vs~LiGa  555 (798)
T Consensus         1 liG~S~aFL~vLeqvS~----lA~l~rPV---LiiGERGTGKELiA~RLHyLS~RW~~Plv~LNCAALse~LldSELFGH   73 (349)
T TIGR02974         1 LIGESNAFLEVLEQVSR----LAPLDRPV---LIIGERGTGKELIAARLHYLSKRWQQPLVKLNCAALSENLLDSELFGH   73 (349)
T ss_pred             CCCCCHHHHHHHHHHHH----CCCCCCCE---EEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHH
T ss_conf             98872789999998751----04678866---886146746899998853324655488626610127825555665310


Q ss_pred             CCHHCCCCCCCCCCHHHHHCCC-------EEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCH
Q ss_conf             8000256444310035551585-------177740445502899999999877750217799776125429999424214
Q gi|254780163|r  556 PPGYVGFGQGGILADSVDQNPY-------SVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGA  628 (798)
Q Consensus       556 ppGYvG~~egg~Lte~vr~~P~-------sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~  628 (798)
T Consensus        74 --------EaGAFTGA~~rh~GRFERAdGGTLFLDElAtas~~VQEKLLRViEYG~fERVGG~~~l~vDVRlvaATN~DL  145 (349)
T TIGR02974        74 --------EAGAFTGAKKRHEGRFERADGGTLFLDELATASLAVQEKLLRVIEYGEFERVGGSQTLKVDVRLVAATNADL  145 (349)
T ss_pred             --------CCCCHHHHCCCCCCCCEECCCCCCHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCEEEECCEEEECCCCCH
T ss_conf             --------010013030468898544368873888871421676786612010130330178604773513676214136


Q ss_pred             HHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCC-EEEECCCC--CHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHH
Q ss_conf             553303689882111488999998728878817768-28962889--999999999999999999998669889998899
Q gi|254780163|r  629 LEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLD-SIIPFFPL--SSDIIRQVVHKFIMKLELQLQEKGISFHFSEEV  705 (798)
Q Consensus       629 ~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid-~ii~F~~l--~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~  705 (798)
T Consensus       146 P~------------------lA~~G~FRaDLLDRLAFDVi~LPPLR~R~~DI~lLAe~FA~~Ma~EL~-~~~F~GFt~~A  206 (349)
T TIGR02974       146 PA------------------LAAEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELG-LPLFPGFTPQA  206 (349)
T ss_pred             HH------------------HHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCCHHHHHHH
T ss_conf             98------------------986589840145544565507978888723278999999999999707-86551143899


Q ss_pred             HHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             9999971898101532679999986235
Q gi|254780163|r  706 INWLVSHGYDVKMGARPLERIIKEHVKV  733 (798)
Q Consensus       706 ~~~l~~~~~~~~~GAR~l~r~i~~~i~~  733 (798)
T Consensus       207 ~~~L~~Y~WPG--NvRELkNvvERsVyR  232 (349)
T TIGR02974       207 REQLLEYHWPG--NVRELKNVVERSVYR  232 (349)
T ss_pred             HHHHHCCCCCC--CCHHHHHHHHHHHHH
T ss_conf             99997068888--521244467666530