HHsearch alignment for GI: 254780163 and conserved domain: TIGR03015
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.01 E-value=6.9e-08 Score=75.85 Aligned_cols=223 Identities=17% Similarity=0.204 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCH-HHHEEEEEEEEHHHHHC---CCCCCCH----
Q ss_conf 789999999986226778748966764116689999999985489883-45201445540467530---6343123----
Q gi|254780163|r 209 RHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPD-ILLGARIFSLDMGNLIA---GTRYRGD---- 280 (798)
Q Consensus 209 Rd~EI~riiqIL~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~-~l~~~~i~~ld~~~l~a---g~~~rg~---- 280 (798)
T Consensus 27 ~h~~al~~L~~~l~~~~g~~lltGe~GtGKTtllr~l~~~l~~~~~~~~~i~~~~l~~~~ll~~i~~~lg~~~~~~~~~~ 106 (269)
T TIGR03015 27 GHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAA 106 (269)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHH
T ss_conf 69999999999996489659997299898899999999845934548999769999999999999998598988989999
Q ss_pred HHHHHHHHHHHHCCC-CCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHH----HC-CCCEEEEEECCHHHHHHHHHC--C
Q ss_conf 789999999872038-983999736166301554443447778888766----30-266038873048999998520--1
Q gi|254780163|r 281 FEERIKKIVKEIESY-ANAILYIDEIHTLVGAGSASGISVDASNLLKPA----LS-SGAVRCIGSTTYSEYRQFFEK--D 352 (798)
Q Consensus 281 fe~r~~~~~~~~~~~-~~~ilfideih~ligag~~~g~~~d~an~lkP~----L~-rg~~~~IgatT~~ey~~~~e~--d 352 (798)
T Consensus 107 ~~~~l~~~L~~~~~~g~~~vliIDEAq~L---------~~~~Le~Lr~L~n~e~~~~~ll~iiL~Gqp-eL~~~L~~~~~ 176 (269)
T TIGR03015 107 LLRELEDFLIEQFAAGKRALLVVDEAQNL---------TPELLEELRMLSNFQTDNAKLLQIFLVGQP-EFRETLQSPQL 176 (269)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECHHHC---------CHHHHHHHHHHHCCCCCCCCCEEEEEECCH-HHHHHHCCCCH
T ss_conf 99999999999996699469997242219---------999999999997013588870489995786-79998727402
Q ss_pred HHHHHHC-EEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 1143200-144306878689999998612766541035121117899999865420155564679889986533332114
Q gi|254780163|r 353 KALVRRF-QKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVIDEAGASQILQP 431 (798)
Q Consensus 353 ~al~rrF-~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdkAidllDea~a~~~~~~ 431 (798)
T Consensus 177 ~~l~qRI~~~~~L~pl~~eet~~YI~~RL~~AG~~~~~~Ft~~A~~~I~~~S~G~------PR~IN----~Lc~~aLl~a 246 (269)
T TIGR03015 177 QQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI------PRLIN----ILCDRLLLSA 246 (269)
T ss_pred HHHHHCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCC------HHHHH----HHHHHHHHHH
T ss_conf 5455507679984799989999999999986699999985999999999986990------08999----9999999999
Q ss_pred HHHHHCCCCHHHHHHHHHHC
Q ss_conf 43221136578999866310
Q gi|254780163|r 432 LSKRRKFITEKDIKKTIASM 451 (798)
Q Consensus 432 ~~~~~~~~~~~~i~~~~~~~ 451 (798)
T Consensus 247 ~~~~~~~I~~~~v~~~~~el 266 (269)
T TIGR03015 247 FLEEKREIGGEEVREVIAEI 266 (269)
T ss_pred HHHCCCCCCHHHHHHHHHHH
T ss_conf 99488867999999999976