HHsearch alignment for GI: 254780163 and conserved domain: cd00009
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.43 E-value=2.3e-12 Score=108.03 Aligned_cols=146 Identities=29% Similarity=0.403 Sum_probs=103.5
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC---CCCEEEEEHHHHHCCCCCCHHCCCCC
Q ss_conf 458999999999877520445657874068861432003889999987304---77337720688612465301104780
Q gi|254780163|r 481 GQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL---GVQLLRFDMSEYMERHAVSRLIGAPP 557 (798)
Q Consensus 481 GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~---~~~lir~dmsey~e~~~vs~LiGapp 557 (798)
T Consensus 2 ~~~~~~~~l~~~~~~---------~~~~~ill~GppGtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 70 (151)
T cd00009 2 GQEEAIEALREALEL---------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGH-- 70 (151)
T ss_pred CCHHHHHHHHHHHHC---------CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHCCHHHHHHHHHHH--
T ss_conf 857999999999818---------799808998999988659999999971213798278547770467777576057--
Q ss_pred HHCCCCCCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCC
Q ss_conf 00256444310035551585177740445502899999999877750217799776125429999424214553303689
Q gi|254780163|r 558 GYVGFGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIG 637 (798)
Q Consensus 558 GYvG~~egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g 637 (798)
T Consensus 71 -----~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~l~~~~~~-----~~~~~~~~vI~~tn~~~~-------- 132 (151)
T cd00009 71 -----FLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDL-----RIDRENVRVIGATNRPLL-------- 132 (151)
T ss_pred -----HHHHHHHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHHHCCC-----CCCCCCEEEEEEECCCCC--------
T ss_conf -----78898999999769986982016655999999999999871575-----406788899995289988--------
Q ss_pred CCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECC
Q ss_conf 882111488999998728878817768289628
Q gi|254780163|r 638 FGSSRNDDADKEALRNFLSPEFLNRLDSIIPFF 670 (798)
Q Consensus 638 ~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~ 670 (798)
T Consensus 133 ---------------~~~~~~~~~R~~~~i~~~ 150 (151)
T cd00009 133 ---------------GDLDRALYDRLDIRIVIP 150 (151)
T ss_pred ---------------CCHHHHHHCCCCEEEECC
T ss_conf ---------------683776425598698638