HHsearch alignment for GI: 254780163 and conserved domain: cd01129
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.10 E-value=0.0017 Score=44.33 Aligned_cols=95 Identities=24% Similarity=0.333 Sum_probs=51.6
Q ss_pred CCCCCEEEEECCCCHHHHHHHHH-HHHH--CCCCEEEE-EHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCCCEE
Q ss_conf 78740688614320038899999-8730--47733772-06886124653011047800025644431003555158517
Q gi|254780163|r 504 NKPIGCYVFSGPTGVGKTEISKQ-LAFA--LGVQLLRF-DMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNPYSV 579 (798)
Q Consensus 504 ~rP~g~flf~GptGvGKTelak~-la~~--~~~~lir~-dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P~sV 579 (798)
T Consensus 77 ~~~~GlilitGptGSGKtTtl~a~l~~~~~~~~~i~tiEdPvE~~~~~~~Q~~v~~~~---g~~~~~~lr~~LR~dP-Dv 152 (264)
T cd01129 77 EKPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKA---GLTFARGLRAILRQDP-DI 152 (264)
T ss_pred HCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEECCCC---CCCHHHHHHHHHCCCC-CE
T ss_conf 0899889997899997799999999864368850899867631456887357616666---8789999999855699-98
Q ss_pred EEECCHHHCCHHHHHHHHHHHHHHH
Q ss_conf 7740445502899999999877750
Q gi|254780163|r 580 VLLDEIEKSHPDVLNILLQIMDYGI 604 (798)
Q Consensus 580 vl~DEiEKAh~~v~~~llqild~G~ 604 (798)
T Consensus 153 i~igEiRD--~eta~~a~~aa~tGh 175 (264)
T cd01129 153 IMVGEIRD--AETAEIAVQAALTGH 175 (264)
T ss_pred EEECCCCC--HHHHHHHHHHHHHCC
T ss_conf 87468899--999999999997099