HHsearch alignment for GI: 254780163 and conserved domain: cd01130

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.93  E-value=0.0017  Score=44.19  Aligned_cols=91  Identities=26%  Similarity=0.407  Sum_probs=48.0

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHH--CCCCEEEE-EHHHHHC--CCCCCHHCCCCCHHCCCC---CCCCCCHHHHHCCCEE
Q ss_conf             06886143200388999998730--47733772-0688612--465301104780002564---4431003555158517
Q gi|254780163|r  508 GCYVFSGPTGVGKTEISKQLAFA--LGVQLLRF-DMSEYME--RHAVSRLIGAPPGYVGFG---QGGILADSVDQNPYSV  579 (798)
Q Consensus       508 g~flf~GptGvGKTelak~la~~--~~~~lir~-dmsey~e--~~~vs~LiGappGYvG~~---egg~Lte~vr~~P~sV  579 (798)
T Consensus        26 ~nIlIsG~tGSGKTTll~al~~~i~~~~rivtiEd~~El~l~~~~~v~-l~~~~~~~~~~~~~~~~~li~~aLR~~p-d~  103 (186)
T cd01130          26 KNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVR-LVTRPGNVEGSGEVTMADLLRSALRMRP-DR  103 (186)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCEEE-EEEECCCCCCCCEECHHHHHHHHCCCCC-CE
T ss_conf             989998999998999999999613345645984153540477775688-8860464578650349999887366899-73


Q ss_pred             EEECCHHHCCHHHHHHHHHHHHHH
Q ss_conf             774044550289999999987775
Q gi|254780163|r  580 VLLDEIEKSHPDVLNILLQIMDYG  603 (798)
Q Consensus       580 vl~DEiEKAh~~v~~~llqild~G  603 (798)
T Consensus       104 iivGEiR~--~Ea~~-~l~a~~tG  124 (186)
T cd01130         104 IIVGEVRG--GEALD-LLQAMNTG  124 (186)
T ss_pred             EECCCCCC--HHHHH-HHHHHHCC
T ss_conf             73175683--99999-99999748