HHsearch alignment for GI: 254780163 and conserved domain: cd01130
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.93 E-value=0.0017 Score=44.19 Aligned_cols=91 Identities=26% Similarity=0.407 Sum_probs=48.0
Q ss_pred CEEEEECCCCHHHHHHHHHHHHH--CCCCEEEE-EHHHHHC--CCCCCHHCCCCCHHCCCC---CCCCCCHHHHHCCCEE
Q ss_conf 06886143200388999998730--47733772-0688612--465301104780002564---4431003555158517
Q gi|254780163|r 508 GCYVFSGPTGVGKTEISKQLAFA--LGVQLLRF-DMSEYME--RHAVSRLIGAPPGYVGFG---QGGILADSVDQNPYSV 579 (798)
Q Consensus 508 g~flf~GptGvGKTelak~la~~--~~~~lir~-dmsey~e--~~~vs~LiGappGYvG~~---egg~Lte~vr~~P~sV 579 (798)
T Consensus 26 ~nIlIsG~tGSGKTTll~al~~~i~~~~rivtiEd~~El~l~~~~~v~-l~~~~~~~~~~~~~~~~~li~~aLR~~p-d~ 103 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVR-LVTRPGNVEGSGEVTMADLLRSALRMRP-DR 103 (186)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCEEE-EEEECCCCCCCCEECHHHHHHHHCCCCC-CE
T ss_conf 989998999998999999999613345645984153540477775688-8860464578650349999887366899-73
Q ss_pred EEECCHHHCCHHHHHHHHHHHHHH
Q ss_conf 774044550289999999987775
Q gi|254780163|r 580 VLLDEIEKSHPDVLNILLQIMDYG 603 (798)
Q Consensus 580 vl~DEiEKAh~~v~~~llqild~G 603 (798)
T Consensus 104 iivGEiR~--~Ea~~-~l~a~~tG 124 (186)
T cd01130 104 IIVGEVRG--GEALD-LLQAMNTG 124 (186)
T ss_pred EECCCCCC--HHHHH-HHHHHHCC
T ss_conf 73175683--99999-99999748