HHsearch alignment for GI: 254780163 and conserved domain: cd01131
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.35 E-value=0.0007 Score=47.03 Aligned_cols=93 Identities=24% Similarity=0.418 Sum_probs=59.3
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHC----CCCEEEE-EHHHHHCCCCCCHHCCCCCHH--CCCCCCCCCCHHHHHCCCEEE
Q ss_conf 068861432003889999987304----7733772-068861246530110478000--256444310035551585177
Q gi|254780163|r 508 GCYVFSGPTGVGKTEISKQLAFAL----GVQLLRF-DMSEYMERHAVSRLIGAPPGY--VGFGQGGILADSVDQNPYSVV 580 (798)
Q Consensus 508 g~flf~GptGvGKTelak~la~~~----~~~lir~-dmsey~e~~~vs~LiGappGY--vG~~egg~Lte~vr~~P~sVv 580 (798)
T Consensus 2 GliLitG~TGSGKTTtl~all~~i~~~~~~~IiTiEDPiE~~~~~~~~~i~q~e~g~~~~sf~~--~lr~aLR~~P-DvI 78 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFEN--ALKAALRQDP-DVI 78 (198)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHCCCCCEEEEECCCCCCCCCHHH--HHHHHHHHCC-CEE
T ss_conf 3899989999979999999998536378836999647377523676448873330788637999--9999985488-857
Q ss_pred EECCHHHCCHHHHHHHHHHHHHHHC
Q ss_conf 7404455028999999998777502
Q gi|254780163|r 581 LLDEIEKSHPDVLNILLQIMDYGIL 605 (798)
Q Consensus 581 l~DEiEKAh~~v~~~llqild~G~l 605 (798)
T Consensus 79 ~vGEiR--d~et~~~al~aa~TGHl 101 (198)
T cd01131 79 LVGEMR--DLETIRLALTAAETGHL 101 (198)
T ss_pred ECCCCC--CHHHHHHHHHHHHCCCE
T ss_conf 527778--99999999999971993